RNA polymerase II associates with active genes during DNA replication

  • 0Department of Biochemistry and Molecular Biology, Sidney Kimmel Medical College, Sidney Kimmel Cancer Center, Thomas Jefferson University, Philadelphia, PA, USA.

|

|

Summary

This summary is machine-generated.

RNA polymerase II (Pol II) rapidly re-associates with active genes immediately after DNA replication, resuming transcription without needing epigenetic marks. This suggests Pol II remains near DNA during replication.

Area Of Science

  • Molecular Biology
  • Epigenetics
  • Gene Regulation

Background

  • Transcriptional machinery is thought to detach during DNA replication.
  • Epigenetic marks are believed to maintain transcriptional memory and rebuild chromatin.
  • RNA polymerase II (Pol II) is thought to be recruited after chromatin rebuilding.

Purpose Of The Study

  • To investigate when and how Pol II is recruited back to daughter DNA strands.
  • To understand the transition from DNA replication to transcription resumption.

Main Methods

  • Experimental investigation of Pol II behavior post-replication fork passage.
  • Analysis of Pol II complex association with nascent DNA strands.

Main Results

  • Pol II, with transcription proteins and immature RNA, re-associates with active genes on both leading and lagging strands immediately after replication.
  • Transcription rapidly resumes on nascent DNA.
  • A Pol II-PCNA interaction may retain the transcription complex near DNA.

Conclusions

  • The transcriptionally active Pol II complex may remain in close proximity to DNA during replication.
  • Epigenetic marks might not be essential for recruiting Pol II to newly synthesized DNA.
  • Findings challenge the established model of transcription-replication coupling.

Related Concept Videos

Replication in Prokaryotes 01:32

25.1K

DNA replication has three main steps: initiation, elongation, and termination. Replication in prokaryotes begins when initiator proteins bind to the single origin of replication (ori) on the cell's circular chromosome. Replication then proceeds around the entire circle of the chromosome in each direction from the two replication forks, resulting in two DNA molecules.
Many Proteins Work Together to Replicate the Chromosome
Replication is coordinated and carried out by a host of specialized...

RNA Polymerase II Accessory Proteins 02:36

9.2K

Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...

Replication in Eukaryotes 02:31

171.0K

Overview

In eukaryotic cells, DNA replication is highly conserved and tightly regulated. Multiple linear chromosomes must be duplicated with high fidelity before cell division, so there are many proteins that fill specialized roles in the replication process. Replication occurs in three phases: initiation, elongation, and termination, and ends with two complete sets of chromosomes in the nucleus.

Many Proteins Orchestrate Replication at the Origin

Eukaryotic replication follows many of the...

The Replisome 03:01

33.9K

DNA replication is carried out by a large complex of proteins that act in a coordinated matter to achieve high-fidelity DNA replication. Together this complex is known as the DNA replication machinery or the replisome.
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with...

Eukaryotic RNA Polymerases 00:58

24.3K

RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action.
All three eukaryotic RNAPs require specific transcription factors, of which the...

Restarting Stalled Replication Forks 02:37

5.8K

DNA replication is initiated at sites containing predefined DNA sequences known as origins of replication. DNA is unwound at these sites by the minichromosome maintenance (MCM) helicase and other factors such as Cdc45 and the associated GINS complex.The unwound single strands are protected by replication protein A (RPA) until DNA polymerase starts synthesizing DNA at the 5’ end of the strand in the same direction as the replication fork. To prevent the replication fork from falling apart,...