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A Comparative Analysis of Data Analysis Tools for Data-Independent Acquisition Mass Spectrometry

Fangfei Zhang1, Weigang Ge2, Lingling Huang2

  • 1Center for Intelligent Proteomics, Westlake Laboratory of Life Sciences and Biomedicine, Hangzhou, Zhejiang Province, China; Key Laboratory of Structural Biology of Zhejiang Province, School of Life Sciences, Westlake University, Hangzhou, Zhejiang Province, China.

Molecular & Cellular Proteomics : MCP
|July 22, 2023
PubMed
Summary

Data-independent acquisition (DIA) mass spectrometry generates reproducible proteome data. Library-free DIA analysis tools show promise, but comprehensive spectral libraries remain beneficial for DIA-mass spectrometry.

Keywords:
DIA-NNEncyclopeDIAOpenSWATHSkylineSpectronautdata-independent acquisitionmass spectrometryproteomics

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