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Artificial RNA Polymerase II Elongation Complexes for Dissecting Co-transcriptional RNA Processing Events
Published on: May 13, 2019
Autonomous action and cooperativity between the ONECUT2 transcription factor and its 3' untranslated region
Kenneth Steadman1, Sungyong You1, Dustin V Srinivas1
1Division of Cancer Biology and Therapeutics, Biomedical Sciences and Pathology and Laboratory Medicine, Department of Urology, Cedars-Sinai Medical Center, Samuel Oschin Comprehensive Cancer Institute, Los Angeles, CA, United States.
Abstract:
The transcription factor ONECUT2 (OC2) is a master transcriptional regulator operating in metastatic castration-resistant prostate cancer that suppresses androgen receptor activity and promotes neural differentiation and tumor cell survival. OC2 mRNA possesses an unusually long (14,575 nt), evolutionarily conserved 3' untranslated region (3' UTR) with many microRNA binding sites, including up to 26 miR-9 sites. This is notable because miR-9 targets many of the same genes regulated by the OC2 protein. Paradoxically, OC2 expression is high in tissues with high miR-9 expression. The length and complex secondary structure of OC2 mRNA suggests that it is a potent master competing endogenous RNA (ceRNA) capable of sequestering miRNAs. Here, we describe a novel role for OC2 3' UTR in lethal prostate cancer consistent with a function as a ceRNA. A plausible ceRNA network in OC2-driven tumors was constructed computationally and then confirmed in prostate cancer cell lines. Genes regulated by OC2 3' UTR exhibited high overlap (up to 45%) with genes driven by the overexpression of the OC2 protein in the absence of 3' UTR, indicating a cooperative functional relationship between the OC2 protein and its 3' UTR. These overlapping networks suggest an evolutionarily conserved mechanism to reinforce OC2 transcription by protection of OC2-regulated mRNAs from miRNA suppression. Both the protein and 3' UTR showed increased polycomb-repressive complex activity. The expression of OC2 3' UTR mRNA alone (without protein) dramatically increased the metastatic potential by in vitro assays. Additionally, OC2 3' UTR increased the expression of Aldo-Keto reductase and UDP-glucuronyl transferase family genes responsible for altering the androgen synthesis pathway. ONECUT2 represents the first-described dual-modality transcript that operates as both a key transcription factor driving castration-resistant prostate cancer and a master ceRNA that promotes and protects the same transcriptional network.
Insights
ONECUT2 (OC2) acts as both a transcription factor and a competing endogenous RNA (ceRNA) in prostate cancer. Its 3' UTR promotes metastasis and protects OC2-regulated genes from microRNA suppression, reinforcing tumor growth.
Area of Science:
- Molecular Biology
- Cancer Research
- Genetics
Background:
- ONECUT2 (OC2) is a key regulator in metastatic castration-resistant prostate cancer, influencing androgen receptor activity, neural differentiation, and tumor cell survival.
- OC2 mRNA has an exceptionally long 3' untranslated region (UTR) with numerous microRNA binding sites, including many for miR-9, which targets similar genes as OC2 protein.
- The paradox of high OC2 and miR-9 expression suggests a regulatory mechanism beyond simple targeting.
Purpose of the Study:
- To investigate the novel role of the OC2 3' UTR in lethal prostate cancer.
- To explore the function of OC2 3' UTR as a competing endogenous RNA (ceRNA).
- To elucidate the cooperative relationship between OC2 protein and its 3' UTR in regulating gene expression and promoting cancer progression.
Main Methods:
- Computational construction of a ceRNA network involving OC2 3' UTR in OC2-driven tumors.
- Experimental validation of the ceRNA network in prostate cancer cell lines.
- In vitro assays to assess the metastatic potential conferred by OC2 3' UTR expression.
Main Results:
- A functional ceRNA network for OC2 3' UTR was identified and confirmed.
- Genes regulated by OC2 3' UTR significantly overlapped with those regulated by OC2 protein, indicating a cooperative function.
- OC2 3' UTR expression alone dramatically increased metastatic potential and altered androgen synthesis pathway genes (Aldo-Keto reductase, UDP-glucuronyl transferase).
Conclusions:
- OC2 3' UTR functions as a master ceRNA, sequestering miRNAs and protecting OC2-regulated mRNAs from suppression.
- The OC2 protein and its 3' UTR exhibit cooperative activity, reinforcing OC2-driven transcriptional networks and promoting castration-resistant prostate cancer.
- ONECUT2 is a unique dual-modality transcript, acting as both a critical transcription factor and a master ceRNA in prostate cancer progression.
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