Paracholeplasma manati sp. nov. isolated from Florida manatees (Trichechus manatus latirostris)
Dmitriy V Volokhov1, Vyacheslav A Furtak1, Tatiana A Zagorodnyaya1
1Center for Biologics Evaluation and Research, US Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993, USA.
Abstract:
Four novel strains of a member of the genus Paracholeplasma (OakleyT, Holly, Lorelei and Ariel) were isolated from skin of Florida manatees (Trichechus manatus latirostris). These strains were phenotypically and genetically characterized and compared with the known species of the genera Acholeplasma (A.), Alteracholeplasma (Al.), Haploplasma (H.), Paracholeplasma (P.) and Mariniplasma (M.). All the strains produced acid from glucose but did not hydrolyze arginine or urea. All were propagated in ambient air supplemented with 5±1 % CO2 at 35-37 °C using SP4-Z, Columbia and brain-heart infusion medium. Colonies on solid medium showed a typical fried-egg appearance and transmission electron microscopy revealed a typical mycoplasma-like cellular morphology. The results of phylogenetic analyses based on partial 16S rRNA, rpoB, gyrB and parE gene sequences and the whole proteome data indicated that the novel species is a unique species but phylogenetically closely related to Paracholeplasma vituli, Paracholeplasma morum and 'Paracholeplasma brassicae'. The average nucleotide identity and digital DNA-DNA hybridization values between strain OakleyT and the closely related species were significantly lower than the accepted thresholds for describing novel prokaryotic species at the genomic level. On the basis of the genomic, phenotypic and phylogenetic properties, the novel strains represent a novel species of the genus Paracholeplasma, for which the name Paracholeplasma manati sp. nov. with the type strain OakleyT (=NCTC 14352T =DSM 110686T) is proposed. The genomic DNA G+C content and complete draft genome size for the type strain are 38.35 % and 1 873 856 bp, respectively.
Insights
Four new species of Paracholeplasma bacteria were discovered on Florida manatees. These novel bacteria, named Paracholeplasma manati, are genetically and phenotypically distinct from known species.
Area of Science:
- Microbiology
- Mycoplasmology
- Marine Mammal Health
Background:
- The genus Paracholeplasma comprises bacteria that can inhabit various animal hosts.
- Understanding the diversity of microbial communities associated with marine mammals is crucial for assessing their health.
Purpose of the Study:
- To isolate and characterize novel bacterial strains from Florida manatees.
- To determine the phylogenetic and genomic relationships of these novel strains within the genus Paracholeplasma.
Main Methods:
- Isolation of bacteria from Florida manatee skin.
- Phenotypic characterization including growth conditions and biochemical tests.
- Genetic analysis using 16S rRNA, rpoB, gyrB, and parE gene sequencing.
- Whole-proteome phylogenetic analysis.
- Genomic analysis including ANI and dDDH calculations.
Main Results:
- Four novel Paracholeplasma strains (OakleyT, Holly, Lorelei, Ariel) were isolated from manatee skin.
- These strains exhibited unique phenotypic characteristics, including acid production from glucose.
- Phylogenetic and genomic analyses confirmed these strains represent a novel species, Paracholeplasma manati sp. nov., distinct from known Paracholeplasma species.
Conclusions:
- The discovery of Paracholeplasma manati expands the known diversity of the genus Paracholeplasma.
- This finding highlights the unique microbiome associated with Florida manatees.
- Further research is warranted to understand the ecological role and potential impact of P. manati on manatee health.
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