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Using deep learning to track time × frequency whistle contours of toothed whales without human-annotated training
Pu Li1, Xiaobai Liu1, Holger Klinck2
1Department of Computer Science, San Diego State University, San Diego, California 92182, USA.
The Journal of the Acoustical Society of America
|July 26, 2023
Summary
This study introduces a new method for extracting whale whistle contours using pseudo-labels, reducing annotation costs. The technique significantly improves performance, rivaling expert-annotated models.
Area of Science:
- Bioacoustics
- Machine Learning
- Marine Mammal Research
Background:
- Odontocetes (toothed whales) produce whistles with distinct contour shapes.
- Automatic extraction of these whistle contours is crucial for applications like species classification and population estimation.
- Deep learning models show promise but require extensive expert annotation.
Purpose of the Study:
- To develop a cost-effective method for extracting odontocete whistle contours.
- To address the limitations of manual annotation in deep learning models.
- To improve the accuracy of whistle contour extraction using automatically generated pseudo-labels.
Main Methods:
- A novel technique utilizing automatically generated pseudo-labels for training deep learning models.
- Development of an improved loss function to compensate for pseudo-label inaccuracies.
- Evaluation of the technique using pseudo-labels from two different algorithms.
Main Results:
- Standard training methods fail with pseudo-labels; the proposed loss function significantly enhances performance.
- Models trained with pseudo-labels achieved high F1-scores (86.31% and 87.2%).
- Performance is competitive with models trained on a large dataset of expert-annotated whistles (87.47% F1-score).
Conclusions:
- The developed technique effectively learns from cost-efficient pseudo-labels for whistle contour extraction.
- This approach offers a viable alternative to labor-intensive expert annotation.
- The method demonstrates strong performance, enabling broader application in bioacoustic analysis.

