Increased Phospholipid Flux Bypasses Overlapping Essential Requirements for the Yeast Sac1p Phosphoinositide Phosphatase and ER-PM Membrane Contact Sites
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Updated: Jul 21, 2025

Fluorescence-Based Measurements of Phosphatidylserine/Phosphatidylinositol 4-Phosphate Exchange Between Membranes
Published on: March 14, 2021
Aleksa Nenadic1, Mohammad F Zaman1, Jesper Johansen1
1Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia, Canada.
Abstract:
In budding yeast cells, much of the inner surface of the plasma membrane (PM) is covered with the endoplasmic reticulum (ER). This association is mediated by seven ER membrane proteins that confer cortical ER-PM association at membrane contact sites (MCSs). Several of these membrane "tether" proteins are known to physically interact with the phosphoinositide phosphatase Sac1p. However, it is unclear how or if these interactions are necessary for their interdependent functions. We find that SAC1 inactivation in cells lacking the homologous synaptojanin-like genes INP52 and INP53 results in a significant increase in cortical ER-PM MCSs. We show in sac1Δ, sac1tsinp52Δ inp53Δ, or Δ-super-tether (Δ-s-tether) cells lacking all seven ER-PM tethering genes that phospholipid biosynthesis is disrupted and phosphoinositide distribution is altered. Furthermore, SAC1 deletion in Δ-s-tether cells results in lethality, indicating a functional overlap between SAC1 and ER-PM tethering genes. Transcriptomic profiling indicates that SAC1 inactivation in either Δ-s-tether or inp52Δ inp53Δ cells induces an ER membrane stress response and elicits phosphoinositide-dependent changes in expression of autophagy genes. In addition, by isolating high-copy suppressors that rescue sac1Δ Δ-s-tether lethality, we find that key phospholipid biosynthesis genes bypass the overlapping function of SAC1 and ER-PM tethers and that overexpression of the phosphatidylserine/phosphatidylinositol-4-phosphate transfer protein Osh6 also provides limited suppression. Combined with lipidomic analysis and determinations of intracellular phospholipid distributions, these results suggest that Sac1p and ER phospholipid flux controls lipid distribution to drive Osh6p-dependent phosphatidylserine/phosphatidylinositol-4-phosphate counter-exchange at ER-PM MCSs.
Insights
Sac1p and endoplasmic reticulum-plasma membrane tethering proteins coordinate lipid distribution at membrane contact sites. Disrupting this process impacts phospholipid biosynthesis and triggers cellular stress responses.
Area of Science:
- Cell Biology
- Membrane Biology
- Biochemistry
Background:
- The plasma membrane (PM) in budding yeast is closely associated with the endoplasmic reticulum (ER) at membrane contact sites (MCSs).
- This association is maintained by seven ER membrane proteins, known as ER-PM tethers, some of which interact with the phosphoinositide phosphatase Sac1p.
- The functional significance of these interactions for tethering and cellular processes remains largely unexplored.
Purpose of the Study:
- To investigate the functional relationship between Sac1p and ER-PM tethering proteins.
- To elucidate the role of Sac1p in regulating phospholipid biosynthesis and phosphoinositide distribution at ER-PM MCSs.
- To identify mechanisms that compensate for the loss of Sac1p function in the context of ER-PM tethering.
Main Methods:
- Genetic analysis of Sac1p and ER-PM tether mutants in budding yeast (Saccharomyces cerevisiae).
- Transcriptomic profiling to assess cellular responses to genetic perturbations.
- Lipidomic analysis and determination of intracellular phospholipid distributions.
- Identification and characterization of high-copy suppressors for genetic lethality.
Main Results:
- Sac1p inactivation exacerbates the increase in ER-PM MCSs in cells lacking specific synaptojanin-like genes (INP52, INP53).
- Loss of Sac1p function in cells lacking all ER-PM tethers leads to disrupted phospholipid biosynthesis, altered phosphoinositide distribution, and lethality.
- SAC1 deletion induces an ER membrane stress response and affects autophagy gene expression, dependent on phosphoinositides.
- Overexpression of phospholipid biosynthesis genes or the phosphatidylserine/phosphatidylinositol-4-phosphate transfer protein Osh6 can suppress the lethality associated with Sac1p loss.
Conclusions:
- Sac1p and ER-PM tethers share overlapping functions, crucial for maintaining cellular homeostasis.
- Sac1p and ER phospholipid flux are critical for regulating lipid distribution at ER-PM MCSs.
- Osh6p-dependent counter-exchange of phosphatidylserine and phosphatidylinositol-4-phosphate at ER-PM MCSs is a key process regulated by Sac1p and ER phospholipid flux.
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