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Updated: Jul 20, 2025

Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
Histone methyltransferase KMT2D inhibits ENKTL carcinogenesis by epigenetically activating SGK1 and SOCS1
Yue-Hua Zhang1,2, Qing Tao1, Wen-Yan Zhang1
1Department of Pathology, West China Hospital of Sichuan University, Chengdu, China.
Background:
Epigenetic alteration plays an essential role in the occurrence and development of extranodal natural killer/T cell lymphoma (ENKTL). Histone methyltransferase (HMT) KMT2D is an epigenetic regulator that plays different roles in different tumors, but its role and mechanism in ENKTL are still unclear.
Methods:
We performed immunohistochemical staining of 112 ENKTL formalin-fixed paraffin-embedded (FFPE) samples. Then, we constructed KMT2D knockdown cell lines and conducted research on cell biological behavior. Finally, to further investigate KMT2D-mediated downstream genes, ChIP-seq and ChIP -qPCR was performed.
Results:
The low expression of KMT2D was related to a decreased abundance in histone H3 lysine 4 mono- and trimethylation (H3K4me1/3). In KMT2D knockdown YT and NK-YS cells, cell proliferation was faster (P < 0.05), apoptosis was decreased (P < 0.05), the abundance of S phase cells was increased (P < 0.05), and the level of H3K4me1 was decreased. Notably, ChIP-seq revealed two crucial genes and pathways downregulated by KMT2D.
Conclusions:
KMT2D is a tumor suppressor gene that mediates H3K4me1 and influences ENKTL proliferation and apoptosis by regulating the cell cycle. Moreover, in ENKTL, serum- and glucocorticoid-inducible kinase-1 (SGK1) and suppressor of cytokine signaling-1 (SOCS1) are downstream genes of KMT2D.
Insights
Histone methyltransferase KMT2D acts as a tumor suppressor in extranodal natural killer/T cell lymphoma (ENKTL). It regulates cell proliferation and apoptosis by controlling the cell cycle and downstream genes SGK1 and SOCS1.
Area of Science:
- Oncology
- Epigenetics
- Hematology
Background:
- Epigenetic alterations are crucial in extranodal natural killer/T cell lymphoma (ENKTL) development.
- The role of histone methyltransferase (HMT) KMT2D in ENKTL remains unclear despite its varied roles in other cancers.
Purpose of the Study:
- To elucidate the function and mechanism of KMT2D in ENKTL.
- To investigate KMT2D's impact on cell biological behavior and identify its downstream targets in ENKTL.
Main Methods:
- Immunohistochemical staining of 112 ENKTL samples.
- KMT2D knockdown cell line construction and analysis of cell behavior.
- Chromatin immunoprecipitation sequencing (ChIP-seq) and ChIP-qPCR to identify downstream genes.
Main Results:
- Low KMT2D expression correlated with reduced histone H3 lysine 4 mono- and trimethylation (H3K4me1/3).
- KMT2D knockdown accelerated proliferation, decreased apoptosis, and increased S phase cells, linked to lower H3K4me1 levels.
- ChIP-seq identified serum- and glucocorticoid-inducible kinase-1 (SGK1) and suppressor of cytokine signaling-1 (SOCS1) as KMT2D-regulated downstream genes.
Conclusions:
- KMT2D functions as a tumor suppressor in ENKTL.
- KMT2D regulates ENKTL cell cycle, proliferation, and apoptosis via H3K4me1 modification.
- SGK1 and SOCS1 are identified as key downstream mediators of KMT2D function in ENKTL.
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