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Updated: Jul 20, 2025

Author Spotlight: Decoding DNA Repair by Extrachromosomal NHEJ Assay and HR Assays
Published on: February 2, 2024
Arsenic affects homologous recombination and single-strand annealing but not end-joining pathways during DNA
Aya Kurosawa1,2,3, Shinta Saito1, Mikiko Sakurai1
1Graduate School of Nanobioscience, Yokohama City University, Japan.
Abstract:
Arsenic is a carcinogen that can cause skin, lung, and bladder cancer. While DNA double-strand breaks (DSBs) have been implicated in arsenic-induced carcinogenesis, the exact mechanism remains unclear. In this study, we performed genetic analysis to examine the impact of arsenic trioxide (As2 O3 ) on four different DSB repair pathways using the human pre-B cell line Nalm-6. Random integration analysis showed that As2 O3 does not negatively affect non-homologous end joining or polymerase theta-mediated end joining. In contrast, chromosomal DSB repair analysis revealed that As2 O3 decreases the efficiency of homologous recombination (HR) and, less prominently, single-strand annealing. Consistent with this finding, As2 O3 decreased gene-targeting efficiency, owing to a significant reduction in the frequency of HR-mediated targeted integration. To further verify the inhibitory effect of arsenic on HR, we examined cellular sensitivity to olaparib and camptothecin, which induce one-ended DSBs requiring HR for precise repair. Intriguingly, we found that As2 O3 significantly enhances sensitivity to those anticancer agents in HR-proficient cells. Our results suggest that arsenic-induced genomic instability is attributed to HR suppression, providing valuable insights into arsenic-associated carcinogenesis and therapeutic options.
Insights
Arsenic trioxide suppresses homologous recombination (HR), a key DNA repair pathway. This suppression contributes to genomic instability and may explain arsenic-induced cancer and enhanced sensitivity to certain cancer drugs.
Area of Science:
- Molecular Biology
- Genetics
- Cancer Research
Background:
- Arsenic is a known carcinogen linked to various cancers.
- DNA double-strand breaks (DSBs) are implicated in arsenic-induced carcinogenesis, but the precise mechanisms are not fully understood.
- Understanding how arsenic affects DNA repair is crucial for elucidating its carcinogenic potential.
Purpose of the Study:
- To investigate the impact of arsenic trioxide (As2O3) on different DNA double-strand break (DSB) repair pathways.
- To determine the role of DSB repair pathway modulation in arsenic-induced genomic instability and carcinogenesis.
- To explore potential therapeutic implications of arsenic's effects on DNA repair.
Main Methods:
- Genetic analysis of four DSB repair pathways in the human pre-B cell line Nalm-6.
- Assessment of non-homologous end joining (NHEJ), polymerase theta-mediated end joining (Poliθ-MMEJ), homologous recombination (HR), and single-strand annealing (SSA) efficiencies.
- Evaluation of cellular sensitivity to olaparib and camptothecin in the presence of As2O3.
Main Results:
- Arsenic trioxide (As2O3) did not significantly impair NHEJ or Poliθ-MMEJ.
- As2O3 demonstrably decreased the efficiency of homologous recombination (HR) and, to a lesser extent, single-strand annealing (SSA).
- As2O3 treatment enhanced sensitivity to olaparib and camptothecin in HR-proficient cells, indicating compromised HR repair.
Conclusions:
- Arsenic trioxide suppresses homologous recombination (HR), a critical DNA repair pathway.
- The inhibition of HR by arsenic contributes to genomic instability, offering a mechanistic insight into arsenic-induced carcinogenesis.
- These findings suggest potential therapeutic strategies by targeting HR in arsenic-exposed individuals or cancers.
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