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Updated: Jul 20, 2025

Analyzing Melts and Fluids from Ab Initio Molecular Dynamics Simulations with the UMD Package
Published on: September 17, 2021
Automated characterization of spatial and dynamical heterogeneity in supercooled liquids via implementation of
1Ames Laboratory and Department of Chemistry, Iowa State University, Ames, IA, United States of America.
Abstract:
A computational approach by an implementation of the principle component analysis (PCA) withK-means and Gaussian mixture (GM) clustering methods from machine learning algorithms to identify structural and dynamical heterogeneities of supercooled liquids is developed. In this method, a collection of the average weighted coordination numbers (WCNs‾) of particles calculated from particles' positions are used as an order parameter to build a low-dimensional representation of feature (structural) space forK-means clustering to sort the particles in the system into few meso-states using PCA. Nano-domains or aggregated clusters are also formed in configurational (real) space from a direct mapping using associated meso-states' particle identities with some misclassified interfacial particles. These classification uncertainties can be improved by a co-learning strategy which utilizes the probabilistic GM clustering and the information transfer between the structural space and configurational space iteratively until convergence. A final classification of meso-states in structural space and domains in configurational space are stable over long times and measured to have dynamical heterogeneities. Armed with such a classification protocol, various studies over the thermodynamic and dynamical properties of these domains indicate that the observed heterogeneity is the result of liquid-liquid phase separation after quenching to a supercooled state.
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