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Yeast As a Chassis for Developing Functional Assays to Study Human P53
Published on: August 4, 2019
Shared Gene Targets of the ATF4 and p53 Transcriptional Networks
Gabriele Baniulyte1, Serene A Durham1, Lauren E Merchant1
1Department of Biological Sciences, The RNA Institute, University at Albany, State University of New York, Albany, New York, USA.
Abstract:
The master tumor suppressor p53 regulates multiple cell fate decisions, such as cell cycle arrest and apoptosis, via transcriptional control of a broad gene network. Dysfunction in the p53 network is common in cancer, often through mutations that inactivate p53 or other members of the pathway. Induction of tumor-specific cell death by restoration of p53 activity without off-target effects has gained significant interest in the field. In this study, we explore the gene regulatory mechanisms underlying a putative anticancer strategy involving stimulation of the p53-independent integrated stress response (ISR). Our data demonstrate the p53 and ISR pathways converge to independently regulate common metabolic and proapoptotic genes. We investigated the architecture of multiple gene regulatory elements bound by p53 and the ISR effector ATF4 controlling this shared regulation. We identified additional key transcription factors that control basal and stress-induced regulation of these shared p53 and ATF4 target genes. Thus, our results provide significant new molecular and genetic insight into gene regulatory networks and transcription factors that are the target of numerous antitumor therapies.
Insights
Restoring tumor suppressor p53 activity or stimulating the integrated stress response (ISR) can induce cancer cell death. These pathways independently regulate shared genes, offering new therapeutic targets.
Area of Science:
- Molecular Biology
- Cancer Biology
- Genetics
Background:
- The p53 tumor suppressor is crucial for cell cycle arrest and apoptosis, and its dysfunction is common in cancer.
- Restoring p53 activity for tumor-specific cell death is a promising anticancer strategy.
- The integrated stress response (ISR) offers a p53-independent pathway for potential therapeutic intervention.
Purpose of the Study:
- To investigate the gene regulatory mechanisms of a p53-independent anticancer strategy targeting the ISR.
- To understand how p53 and ISR pathways converge to regulate common genes.
- To identify key transcription factors involved in the shared regulation of metabolic and proapoptotic genes.
Main Methods:
- Analysis of gene regulatory elements bound by p53 and ATF4 (an ISR effector).
- Investigating the architecture of shared gene regulatory networks.
- Identifying transcription factors controlling basal and stress-induced gene expression.
Main Results:
- The p53 and ISR pathways independently regulate common metabolic and proapoptotic genes.
- Detailed architecture of gene regulatory elements controlled by p53 and ATF4 was elucidated.
- Additional transcription factors contributing to the regulation of shared target genes were identified.
Conclusions:
- The p53 and ISR pathways converge on shared target genes, offering a p53-independent therapeutic avenue.
- Understanding these gene regulatory networks provides insights into novel anticancer strategies.
- Identified transcription factors represent potential targets for antitumor therapies.
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