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Application of deep reinforcement learning for spike sorting under multi-class imbalance.

Suchen Li1, Zhuo Tang1, Lifang Yang1

  • 1School of Electrical and Information Engineering, Zhengzhou University, Zhengzhou, 450001, China; Henan Key Laboratory of Brain Science and Brain-Computer Interface Technology, Zhengzhou, 450001, China.

Computers in Biology and Medicine
|August 3, 2023
PubMed
Summary

ImbSorter addresses multi-class imbalance in spike sorting using deep reinforcement learning. This novel approach improves the analysis of neural firing patterns, even with overlapping spikes and noisy data.

Keywords:
Deep reinforcement learningDynamic reward functionMulti-class imbalanceOverlapping spikeSpike sorting

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Area of Science:

  • Computational Neuroscience
  • Machine Learning
  • Signal Processing

Background:

  • Spike sorting is crucial for analyzing neural activity from high-density microelectrode arrays.
  • Simultaneous recording leads to multi-class imbalance issues like overlapping spikes and varying firing rates.

Purpose of the Study:

  • To develop a deep reinforcement learning (DRL) method, ImbSorter, for effective spike sorting under multi-class imbalance.
  • To enhance sensitivity to minor neuronal classes using a dynamic reward function (DRF).

Main Methods:

  • Spike sorting framed as a Markov decision process.
  • A dynamic reward function (DRF) incorporating inter-class imbalance ratios guides the DRL agent.
  • Evaluation on Wave_Clus and macaque datasets with overlapping spikes and multi-scale imbalance.

Main Results:

  • ImbSorter demonstrated improved Macro_F1 scores compared to classical DRL, traditional ML, and advanced techniques.
  • The method showed robustness against overlapping spikes and noise interference.
  • High stability and promising performance on datasets with skewed neuronal firing distributions.

Conclusions:

  • ImbSorter offers a promising solution for spike sorting in the presence of significant class imbalance.
  • The DRL approach with DRF effectively handles complex neural data challenges.
  • This method advances the analysis of neural firing patterns in neuroscience research.