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Updated: Jul 20, 2025

The Soft Agar Colony Formation Assay
Published on: October 27, 2014
WNTinib is a multi-kinase inhibitor with specificity against β-catenin mutant hepatocellular carcinoma
Alex Rialdi1,2,3,4, Mary Duffy1,5, Alex P Scopton1
1Center for Therapeutics Discovery, Department of Oncological Sciences and Pharmacological Sciences, Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Abstract:
Hepatocellular carcinoma (HCC) is a leading cause of cancer-related deaths worldwide. β-Catenin (CTNNB1)-mutated HCC represents 30% of cases of the disease with no precision therapeutics available. Using chemical libraries derived from clinical multi-kinase inhibitor (KI) scaffolds, we screened HCC organoids to identify WNTinib, a KI with exquisite selectivity in CTNNB1-mutated human and murine models, including patient samples. Multiomic and target engagement analyses, combined with rescue experiments and in vitro and in vivo efficacy studies, revealed that WNTinib is superior to clinical KIs and inhibits KIT/mitogen-activated protein kinase (MAPK) signaling at multiple nodes. Moreover, we demonstrate that reduced engagement on BRAF and p38α kinases by WNTinib relative to several multi-KIs is necessary to avoid compensatory feedback signaling-providing a durable and selective transcriptional repression of mutant β-catenin/Wnt targets through nuclear translocation of the EZH2 transcriptional repressor. Our studies uncover a previously unknown mechanism to harness the KIT/MAPK/EZH2 pathway to potently and selectively antagonize CTNNB1-mutant HCC with an unprecedented wide therapeutic index.
Insights
Researchers discovered WNTinib, a novel kinase inhibitor, that selectively targets hepatocellular carcinoma (HCC) with CTNNB1 mutations. This targeted therapy shows promise by inhibiting key signaling pathways, offering a new treatment avenue for this aggressive cancer.
Area of Science:
- Oncology
- Molecular Biology
- Drug Discovery
Background:
- Hepatocellular carcinoma (HCC) is a major global cause of cancer mortality.
- A significant subset of HCC cases (30%) harbor CTNNB1 mutations, lacking specific targeted therapies.
- Existing treatments for HCC often have limited efficacy and broad side effect profiles.
Purpose of the Study:
- To identify a novel, selective therapeutic agent for CTNNB1-mutated HCC.
- To elucidate the mechanism of action for a newly identified kinase inhibitor, WNTinib.
- To evaluate the efficacy and therapeutic index of WNTinib in preclinical models of HCC.
Main Methods:
- Screening of HCC organoids using chemical libraries derived from clinical multi-kinase inhibitor scaffolds.
- Multiomic analyses, target engagement studies, and rescue experiments.
- In vitro and in vivo efficacy studies in human and murine models of CTNNB1-mutated HCC.
Main Results:
- Identification of WNTinib, a highly selective kinase inhibitor for CTNNB1-mutated HCC.
- WNTinib demonstrates superior efficacy compared to existing clinical kinase inhibitors.
- The drug inhibits KIT/mitogen-activated protein kinase (MAPK) signaling and leverages EZH2 for durable transcriptional repression, avoiding compensatory feedback loops.
Conclusions:
- WNTinib represents a potent and selective therapeutic strategy for CTNNB1-mutated HCC.
- The drug's mechanism involves precise targeting of the KIT/MAPK/EZH2 pathway.
- WNTinib offers a promising new treatment with a wide therapeutic index for a challenging subset of liver cancer.
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