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Updated: Jul 20, 2025

Human Pluripotent Stem Cell Based Developmental Toxicity Assays for Chemical Safety Screening and Systems Biology Data Generation
Published on: June 17, 2015
Advancing the use of new approach methodologies for assessing teratogenicity: Building a tiered approach
Abstract:
Many New Approach Methodologies (NAMs) have been developed for the safety assessment of new ingredients. Research into reproductive toxicity and teratogenicity is a particularly high priority, especially given their mechanistic complexity. Forty-six non-teratogenic and 39 teratogenic chemicals were screened for teratogenic potential using the in silico DART model from the OECD QSAR Toolbox; the devTox quickPredict™ (devTox assay) test and the Zebrafish Embryotoxicity Test (ZET). The sensitivity and specificity were 94.7% and 84.1%, respectively, for the DART tree (83 chemicals), 86.1% and 35.6% for the devTox (81 chemicals) and 77.8% and 76.7% for the ZET (57 chemicals). Fifty-three chemicals were tested in all three assays and when results were combined and based on a "2 out of 3 rule", the sensitivity and specificity were 96.0% and 71.4%, respectively. The specificity of the devTox assay for a sub-set of 43 chemicals was increased from 26.1% to 82.6% by incorporating human plasma concentrations into the assay interpretation. When all 85 chemicals were assessed in a decision tree approach, there was an excellent predictivity and assay robustness of 90%. In conclusion, all three models exhibited a good sensitivity and specificity, especially when outcomes from all three were combined or used in "2 out of 3" or a tiered decision tree approach. The latter is an interesting predictive approach for evaluating the teratogenic potential of new chemicals. Future investigations will extend the number of chemicals tested, as well as explore ways to refine the results and obtain a robust Integrated Testing Strategy to evaluate teratogenic potential.
Insights
New Approach Methodologies (NAMs) effectively assess chemical teratogenicity. Combining three methods—in silico DART, devTox, and Zebrafish Embryotoxicity Test—significantly improved predictive accuracy for developmental toxicity evaluations.
Area of Science:
- Toxicology
- Developmental Biology
- Computational Chemistry
Background:
- New Approach Methodologies (NAMs) are crucial for evaluating new ingredient safety.
- Assessing reproductive toxicity and teratogenicity is a high priority due to mechanistic complexity.
Purpose of the Study:
- To screen chemicals for teratogenic potential using multiple in silico and in vitro models.
- To evaluate the sensitivity and specificity of individual and combined NAMs for teratogenicity prediction.
Main Methods:
- Screening of 46 non-teratogenic and 39 teratogenic chemicals.
- Utilized the OECD QSAR Toolbox's DART model, devTox quickPredict™ assay, and Zebrafish Embryotoxicity Test (ZET).
- Applied a "2 out of 3 rule" and a decision tree approach for combined analysis.
Main Results:
- Individual assays showed varying sensitivity and specificity (DART: 94.7%/84.1%, devTox: 86.1%/35.6%, ZET: 77.8%/76.7%).
- Combined "2 out of 3 rule" improved sensitivity to 96.0% and specificity to 71.4%.
- A decision tree approach for 85 chemicals demonstrated 90% predictivity and robustness.
Conclusions:
- All three NAMs demonstrated good sensitivity and specificity.
- Combining assay results, particularly via a "2 out of 3 rule" or decision tree, enhances predictive accuracy for teratogenic potential.
- A tiered decision tree approach offers a robust strategy for evaluating chemical teratogenicity.
Related Concept Videos
Teratogenicity
Mutagenicity and Carcinogenicity
Preclinical Development: Overview

