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Inhibition of METTL3 Results in a Cell-Intrinsic Interferon Response That Enhances Antitumor Immunity
Andrew A Guirguis1,2,3, Yaara Ofir-Rosenfeld4, Kathy Knezevic1
1Cancer Research Division, Peter MacCallum Cancer Centre, Melbourne, Victoria, Australia.
Abstract:
Therapies that enhance antitumor immunity have altered the natural history of many cancers. Consequently, leveraging nonoverlapping mechanisms to increase immunogenicity of cancer cells remains a priority. Using a novel enzymatic inhibitor of the RNA methyl-transferase METTL3, we demonstrate a global decrease in N6-methyladenosine (m6A) results in double-stranded RNA (dsRNA) formation and a profound cell-intrinsic interferon response. Through unbiased CRISPR screens, we establish dsRNA-sensing and interferon signaling are primary mediators that potentiate T-cell killing of cancer cells following METTL3 inhibition. We show in a range of immunocompetent mouse models that although METTL3 inhibition is equally efficacious to anti-PD-1 therapy, the combination has far greater preclinical activity. Using SPLINTR barcoding, we demonstrate that anti-PD-1 therapy and METTL3 inhibition target distinct malignant clones, and the combination of these therapies overcomes clones insensitive to the single agents. These data provide the mole-cular and preclinical rationale for employing METTL3 inhibitors to promote antitumor immunity in the clinic.
Significance:
This work demonstrates that METTL3 inhibition stimulates a cell-intrinsic interferon response through dsRNA formation. This immunomodulatory mechanism is distinct from current immunotherapeutic agents and provides the molecular rationale for combination with anti-PD-1 immune-checkpoint blockade to augment antitumor immunity. This article is featured in Selected Articles from This Issue, p. 2109.
Insights
Inhibiting METTL3 triggers an interferon response, enhancing T-cell killing of cancer cells. Combining METTL3 inhibitors with anti-PD-1 therapy shows superior preclinical activity by targeting distinct cancer clones.
Area of Science:
- Immunology
- Oncology
- Molecular Biology
Background:
- Enhancing antitumor immunity is crucial for cancer treatment.
- Novel strategies are needed to increase cancer cell immunogenicity.
- METTL3 is an RNA methyltransferase involved in various cellular processes.
Purpose of the Study:
- To investigate the effects of METTL3 inhibition on antitumor immunity.
- To explore the potential of METTL3 inhibitors as cancer therapeutics.
- To evaluate the combination of METTL3 inhibition with anti-PD-1 therapy.
Main Methods:
- Utilized a novel enzymatic inhibitor of METTL3.
- Employed unbiased CRISPR screens to identify key mediators.
- Conducted experiments in immunocompetent mouse models.
- Applied SPLINTR barcoding to analyze clonal responses.
Main Results:
- METTL3 inhibition globally decreased N6-methyladenosine (m6A) levels, leading to double-stranded RNA (dsRNA) formation.
- dsRNA sensing and interferon signaling were identified as key mediators of enhanced T-cell killing.
- METTL3 inhibition demonstrated efficacy comparable to anti-PD-1 therapy alone.
- Combination therapy exhibited significantly greater preclinical activity than single agents.
- Distinct malignant clones were targeted by METTL3 inhibition and anti-PD-1 therapy, with combination therapy overcoming resistance.
Conclusions:
- METTL3 inhibition induces a cell-intrinsic interferon response via dsRNA formation, a novel immunomodulatory mechanism.
- This mechanism is distinct from current immunotherapies, supporting combination with agents like anti-PD-1.
- The findings provide a strong molecular and preclinical rationale for using METTL3 inhibitors in combination with immune-checkpoint blockade to augment antitumor immunity in clinical settings.
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