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Updated: Jun 16, 2026

Quantification and Whole Genome Characterization of SARS-CoV-2 RNA in Wastewater and Air Samples
Published on: June 30, 2023
Tracking SARS-CoV-2 RNA through the Wastewater Treatment Process
Hala Abu Ali1, Karin Yaniv2, Edo Bar-Zeev1
1Blaustein Institutes for Desert Research, Zuckerberg Institute for Water Research, Ben-Gurion University of the Negev, Sede Boqer Campus, Beer Sheva 8499000, Israel.
Wastewater treatment reduces SARS-CoV-2 RNA, but significant amounts remain after primary and secondary stages. Tertiary treatment and chlorination are crucial for further reducing virus spread.
Area of Science:
- Environmental science
- Virology
- Public health
Background:
- Municipal sewage contains SARS-CoV-2 RNA from COVID-19 patients.
- Effective wastewater treatment is vital to prevent environmental virus dissemination.
- The impact of different treatment stages on viral RNA reduction remains unclear.
Purpose of the Study:
- To quantify SARS-CoV-2 RNA concentrations in raw sewage and during activated sludge treatment stages.
- To evaluate the effectiveness of wastewater treatment processes in reducing viral RNA.
- To assess the role of tertiary treatment and chlorination in virus inactivation.
Main Methods:
- Samples collected from two Israeli wastewater treatment plants during the 2020 COVID-19 outbreak.
- Ultrafiltration used for sample concentration (2-43 fold) to lower detection limits.
- Quantification of SARS-CoV-2 RNA via real-time polymerase chain reaction.
Main Results:
- Primary and secondary treatment steps achieved approximately 1-log RNA removal on average.
- >100 copies of SARS-CoV-2 RNA/mL were detected in secondary effluents.
- SARS-CoV-2 RNA was rarely detected after chlorination, suggesting treatment efficacy, potentially limited by chlorine dosage.
Conclusions:
- Conventional wastewater treatment partially reduces SARS-CoV-2 RNA.
- Tertiary treatment and chlorination are important for minimizing environmental virus release.
- Further research is needed to optimize treatment for complete viral inactivation.
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