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Updated: Jul 19, 2025

Characterize Disease-related Mutants of RAF Family Kinases by Using a Set of Practical and Feasible Methods
Published on: July 17, 2019
Challenges and Opportunities in the Crusade of BRAF Inhibitors: From 2002 to 2022
Ankit Kumar Singh1, Pankaj Sonawane1, Adarsh Kumar1
1Department of Pharmaceutical Sciences and Natural Products, Central University of Punjab, Ghudda, Bathinda 151401, India.
Abstract:
Serine/threonine-protein kinase B-Raf (BRAF; RAF = rapidly accelerated fibrosarcoma) plays an important role in the mitogen-activated protein kinase (MAPK) signaling cascade. Somatic mutations in the BRAF gene were first discovered in 2002 by Davies et al., which was a major breakthrough in cancer research. Subsequently, three different classes of BRAF mutants have been discovered. This class includes class I monomeric mutants (BRAFV600), class II BRAF homodimer mutants (non-V600), and class III BRAF heterodimers (non-V600). Cancers caused by these include melanoma, thyroid cancer, ovarian cancer, colorectal cancer, nonsmall cell lung cancer, and others. In this study, we have highlighted the major binding pockets in BRAF protein, their active and inactive conformations with inhibitors, and BRAF dimerization and its importance in paradoxical activation and BRAF mutation. We have discussed the first-, second-, and third-generation drugs approved by the Food and Drug Administration and drugs under clinical trials with all four different binding approaches with DFG-IN/OUT and αC-IN/OUT for BRAF protein. We have investigated particular aspects and difficulties with all three generations of inhibitors. Finally, this study has also covered recent developments in synthetic BRAF inhibitors (from their discovery in 2002 to 2022), their unique properties, and importance in inhibiting BRAF mutants.
Insights
This study reviews BRAF mutations and their role in various cancers. It details BRAF inhibitors, from early to recent generations, focusing on their binding mechanisms and clinical applications for targeted cancer therapy.
Area of Science:
- Oncology
- Molecular Biology
- Pharmacology
Background:
- Serine/threonine-protein kinase B-Raf (BRAF) is crucial in the MAPK signaling pathway.
- Somatic BRAF mutations, discovered in 2002, are implicated in numerous cancers.
- Three classes of BRAF mutants (I, II, III) drive diverse malignancies.
Purpose of the Study:
- To analyze BRAF protein's binding pockets, conformations, and dimerization.
- To review BRAF inhibitors, including FDA-approved and investigational drugs.
- To discuss challenges and advancements in BRAF inhibitor development from 2002-2022.
Main Methods:
- Structural analysis of BRAF protein and inhibitor binding pockets.
- Review of BRAF inhibitor generations and their binding modes (DFG-IN/OUT, αC-IN/OUT).
- Literature review of BRAF mutations, dimerization, and inhibitor efficacy.
Main Results:
- Detailed insights into BRAF binding pockets and conformational states with inhibitors.
- Comprehensive overview of first-, second-, and third-generation BRAF inhibitors.
- Exploration of BRAF dimerization's role in paradoxical activation and mutation.
Conclusions:
- BRAF inhibitors have evolved significantly, offering targeted therapeutic strategies.
- Understanding BRAF binding pockets and dimerization is key to developing effective inhibitors.
- Continued research into synthetic BRAF inhibitors promises improved cancer treatment outcomes.
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