Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

tRNA Activation02:26

tRNA Activation

19.3K
Aminoacyl-tRNA synthetases are present in both eukaryotes and bacteria. Though eukaryotes have 20 different aminoacyl-tRNA synthetases to couple to 20 amino acids, many bacteria do not have genes for all of these aminoacyl-tRNA synthetases. Despite this, they still use all 20 amino acids to synthesize their proteins. For instance, some bacteria do not have the gene encoding the enzyme that couples glutamine with its partner tRNA. In these organisms, one enzyme adds glutamic acid to all of the...
19.3K
Ribosome Profiling02:24

Ribosome Profiling

3.6K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
3.6K
Transfer RNA Synthesis02:36

Transfer RNA Synthesis

12.0K
One of the unique features of tRNA is the presence of modified bases. In some tRNAs, modified bases account for nearly 20% of the total bases in the molecule. Altogether, these unusual bases protect the tRNA from enzymatic degradation by RNases.
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
12.0K
RNA-seq03:21

RNA-seq

10.1K
RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
10.1K
Improving Translational Accuracy02:07

Improving Translational Accuracy

11.6K
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
11.6K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Adaptive plasticity of aspartate metabolism in succinate dehydrogenase-deficient cancer cells.

bioRxiv : the preprint server for biology·2026
Same author

Succinate dehydrogenase loss suppresses pyrimidine biosynthesis via succinate-mediated inhibition of aspartate transcarbamylase.

Nature metabolism·2026
Same author

Excess cysteine drives conjugate formation and impairs proliferation of NRF2-activated cancer cells.

Nature metabolism·2026
Same author

Ribosome-associated quality control of aberrant protein production during amino acid limitation.

bioRxiv : the preprint server for biology·2026
Same author

Damage-induced pyroptosis drives endogenous thymic regeneration by activating the purinergic receptor P2Y2.

Cell death & disease·2026
Same author

Recurrent Breast Cancer Cells Depend on <i>De novo</i> Pyrimidine Biosynthesis to Suppress Ferroptosis.

bioRxiv : the preprint server for biology·2025
Same journal

A human-specific genetic modifier reconfigures large-scale cortical network dynamics underlying behavioral performance.

bioRxiv : the preprint server for biology·2026
Same journal

<i>Staphylococcus aureus</i> uses a eukaryotic-like uridyltransferase to make UDP-GlcNAc for cell wall synthesis.

bioRxiv : the preprint server for biology·2026
Same journal

Dynamic redistribution of eIF4F controls cap-dependent translation initiation.

bioRxiv : the preprint server for biology·2026
Same journal

When does additional information improve accuracy of RNA secondary structure prediction?

bioRxiv : the preprint server for biology·2026
Same journal

Normative brain-state trajectories reveal deviation from healthy aging in Alzheimer's disease.

bioRxiv : the preprint server for biology·2026
Same journal

Noradrenergic infraslow rhythm during sleep is the critical link between heart-rate dynamics and memory consolidation.

bioRxiv : the preprint server for biology·2026
See all related articles

Related Experiment Video

Updated: Jul 19, 2025

Genome-wide Analysis of Aminoacylation Charging Levels of tRNA Using Microarrays
07:32

Genome-wide Analysis of Aminoacylation Charging Levels of tRNA Using Microarrays

Published on: June 18, 2010

12.5K

A robust method for measuring aminoacylation through tRNA-Seq.

Kristian Davidsen1,2, Lucas B Sullivan1

  • 1Human Biology Division, Fred Hutchinson Cancer Center, United States.

Biorxiv : the Preprint Server for Biology
|August 14, 2023
PubMed
Summary
This summary is machine-generated.

We present an optimized tRNA charge sequencing (tRNA-Seq) method for precise and accurate measurement of aminoacylated tRNA levels. This robust protocol enables high-throughput analysis and offers insights into tRNA expression and modifications.

More Related Videos

Quantification of the Abundance and Charging Levels of Transfer RNAs in Escherichia coli
10:34

Quantification of the Abundance and Charging Levels of Transfer RNAs in Escherichia coli

Published on: August 22, 2017

9.4K
Author Spotlight: AQRNA-seq Role in Mapping Small RNAs and Unraveling Protein Translation Mechanisms
05:12

Author Spotlight: AQRNA-seq Role in Mapping Small RNAs and Unraveling Protein Translation Mechanisms

Published on: February 2, 2024

786

Related Experiment Videos

Last Updated: Jul 19, 2025

Genome-wide Analysis of Aminoacylation Charging Levels of tRNA Using Microarrays
07:32

Genome-wide Analysis of Aminoacylation Charging Levels of tRNA Using Microarrays

Published on: June 18, 2010

12.5K
Quantification of the Abundance and Charging Levels of Transfer RNAs in Escherichia coli
10:34

Quantification of the Abundance and Charging Levels of Transfer RNAs in Escherichia coli

Published on: August 22, 2017

9.4K
Author Spotlight: AQRNA-seq Role in Mapping Small RNAs and Unraveling Protein Translation Mechanisms
05:12

Author Spotlight: AQRNA-seq Role in Mapping Small RNAs and Unraveling Protein Translation Mechanisms

Published on: February 2, 2024

786

Area of Science:

  • Molecular Biology
  • Genomics
  • Biochemistry

Background:

  • Quantifying aminoacylated transfer RNA (tRNA), or tRNA charge, is crucial for understanding protein synthesis.
  • Existing methods for measuring tRNA charge suffer from limitations in throughput, precision, and accuracy.

Conclusions:

  • The optimized charge tRNA-Seq method offers a precise, accurate, and scalable solution for tRNA charge quantification.
  • This multipurpose method advances tRNA biology research by enabling comprehensive analysis of tRNA expression and modifications.