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Updated: Jul 19, 2025

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Pattern-based Search of Epigenomic Data Using GeNemo
Published on: October 8, 2017
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EpiVar Browser: advanced exploration of epigenomics data under controlled access
David R Lougheed1,2,3, Hanshi Liu2,3,4, Katherine A Aracena5
1Canadian Centre for Computational Genomics, McGill University, Montreal, QC, Canada.
Biorxiv : the Preprint Server for Biology
|August 14, 2023
Summary
Researchers developed the EpiVar Browser to explore epigenomics data, enabling genotype-chromatin phenotype relationships without releasing identifiable information. This tool facilitates secure sharing of sensitive epigenomic datasets.
Area of Science:
- Genomics and Epigenomics
- Computational Biology
- Data Privacy
Background:
- Large-scale human epigenomic datasets are crucial for understanding normal and disease chromatin states.
- Epigenetic data, like genetic data, contains potentially identifiable information, necessitating controlled access.
- Secure sharing of valuable epigenomic datasets is essential but challenging due to privacy concerns.
Approach:
- Developed the EpiVar Browser, guided by the GA4GH Framework for responsible data sharing.
- The tool allows exploration of aggregate epigenomics dataset results, filtering out identifiable information.
- Enables dynamic genotype-epigenome interrogation by aggregating individual genotype data.
Key Points:
- EpiVar Browser facilitates exploration of genotype-chromatin phenotype relationships.
- No identifiable individual genotype data is released, ensuring data privacy.
- Accelerates analyses by bypassing lengthy multi-step approval processes.
Conclusions:
- The EpiVar Browser provides a generalizable strategy for responsible access to sensitive epigenomics data.
- Facilitates secure sharing and analysis of valuable epigenomic datasets.
- Empowers researchers to interrogate genotype-epigenome interactions efficiently and securely.
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