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Next Generation Sequencing for the Detection of Actionable Mutations in Solid and Liquid Tumors
Published on: September 20, 2016
Germline EGFR Mutations and Familial Lung Cancer.
Geoffrey R Oxnard1, Ruthia Chen1, Jennifer C Pharr1
1Dana-Farber Cancer Institute, Boston, MA.
Inherited lung cancer risk is linked to germline EGFR pathogenic variants (PVs), particularly EGFR T790M, found predominantly in the Southeastern US. This founder variant shows variable penetrance, with affected carriers often developing lung adenocarcinoma and nodules.
Area of Science:
- Genetics
- Oncology
- Pulmonology
Background:
- Inherited factors influencing lung cancer risk are not well understood.
- Germline pathogenic variants (PVs) in genes like EGFR can predispose individuals to lung cancer.
- Characterizing these variants is crucial for identifying at-risk families.
Purpose of the Study:
- To investigate the clinical characteristics of families with germline EGFR PVs.
- To understand the inheritance patterns and penetrance of EGFR PVs.
- To identify potential founder effects and geographic enrichment of specific EGFR variants.
Main Methods:
- Prospective enrollment of lung cancer patients and relatives in the Investigating Hereditary Risk from T790M study (NCT01754025).
- Germline testing for EGFR PVs, including EGFR T790M.
- Clinical phenotyping, somatic mutation analysis, and genome-wide haplotyping.
Main Results:
- 141 participants from 59 kindreds were enrolled; 116 were tested for EGFR T790M.
- 55% of carriers (50/91) were diagnosed with lung cancer, with 52% diagnosed by age 60.
- A shared 4.1-Mb haplotype among 89% of carriers suggested a recent founder variant in the Southeastern US.
- 95% of lung cancers in carriers had an EGFR driver comutation.
- Lung nodules were detected in 9/36 germline carriers without cancer, including a young individual.
Conclusions:
- This is the first prospective study of familial EGFR-mutant lung cancer.
- A recent founder germline EGFR T790M variant is enriched in the Southeastern US.
- High prevalence of EGFR-driven lung adenocarcinomas and nodules supports CT screening for high-risk individuals and families.
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