Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Poisson's And Laplace's Equation01:25

Poisson's And Laplace's Equation

3.0K
The electric potential of the system can be calculated by relating it to the electric charge densities that give rise to the electric potential. The differential form of Gauss's law expresses the electric field's divergence in terms of the electric charge density.
3.0K
Magnetostatic Boundary Conditions01:28

Magnetostatic Boundary Conditions

1000
An electric field suffers a discontinuity at a surface charge. Similarly, a magnetic field is discontinuous at a surface current. The perpendicular component of a magnetic field is continuous across the interface of two magnetic mediums. In contrast, its parallel component, perpendicular to the current, is discontinuous by the amount equal to the product of the vacuum permeability and the surface current. Like the scalar potential in electrostatics, the vector potential is also continuous...
1000
Magnetic Susceptibility and Permeability01:31

Magnetic Susceptibility and Permeability

1.2K
In linear magnetic materials, like paramagnets and diamagnets, magnetization is proportional to the magnetic field intensity. The constant of proportionality, a dimensionless number, is called magnetic susceptibility. The value of the susceptibility depends on the type of material.
When diamagnetic materials are placed under an external magnetic field, the moments opposite to the field are induced. Hence, the susceptibility for diamagnets has a minimal negative value of 10-5–10-6. Since...
1.2K
Electrostatic Boundary Conditions01:16

Electrostatic Boundary Conditions

513
Consider an external electric field propagating through a homogeneous medium. When the electric field crosses the surface boundary of the medium, it undergoes a discontinuity. The electric field can be resolved into normal and tangential components. The amount by which the field changes at any boundary is given by the difference between the field components above and below the surface boundary.
The surface integral of an electric field is given by Gauss's law in integral form and is related to...
513
Magnetic Vector Potential01:15

Magnetic Vector Potential

688
In electrostatics, the electric field can be written as the negative gradient of the potential. In magnetostatics, the zero divergence of the magnetic field ensures that the magnetic field can be expressed as the curl of a vector potential. This potential is known as the magnetic vector potential.
Consider an ideal solenoid with n turns per unit length and radius R. If I is the current through the solenoid, the magnetic field inside the solenoid is expressed as the product of vacuum...
688
Divergence and Curl of Magnetic Field01:26

Divergence and Curl of Magnetic Field

3.0K
The magnetic field due to a volume current distribution given by the Biot–Savart Law can be expressed as follows:
3.0K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Alpha_Mesh_Swc: automatic and robust surface mesh generation from the skeleton description of brain cells.

Briefings in bioinformatics·2025
Same author

Practical computation of the diffusion MRI signal based on Laplace eigenfunctions: permeable interfaces.

NMR in biomedicine·2021
Same author

Practical computation of the diffusion MRI signal of realistic neurons based on Laplace eigenfunctions.

NMR in biomedicine·2020
Same journal

Effective contrast-enhanced preprocessing for intracranial artery segmentation in digital subtraction angiography.

Physics in medicine and biology·2026
Same journal

Improving Plan Quality in Adaptive Proton Therapy Using an Interactive Dose Modification Tool.

Physics in medicine and biology·2026
Same journal

Technical Note: Real-Time MLC Control and Latency Measurement Optimization with External Verification.

Physics in medicine and biology·2026
Same journal

Fetus-Specific Hematopoietic Stem Cell Dosimetry Framework for Leukemia-Relevant Target Cells During Prenatal Development.

Physics in medicine and biology·2026
Same journal

Deep learning-based dose prediction to enhance planning efficiency in cervical brachytherapy with hybrid applicators.

Physics in medicine and biology·2026
Same journal

Corrigendum: Referenceless MR thermometry-a comparison of five methods (2017<i>Phys. Med. Biol</i>.<b>62</b>1-16).

Physics in medicine and biology·2026
See all related articles

Related Experiment Video

Updated: Jul 19, 2025

In Situ Monitoring of Diffusion of Guest Molecules in Porous Media Using Electron Paramagnetic Resonance Imaging
06:34

In Situ Monitoring of Diffusion of Guest Molecules in Porous Media Using Electron Paramagnetic Resonance Imaging

Published on: September 2, 2016

6.5K

Incorporating interface permeability into the diffusion MRI signal representation while using impermeable Laplace

Zheyi Yang1, Chengran Fang1, Jing-Rebecca Li1

  • 1Equipe IDEFIX, INRIA Saclay, UMA, ENSTA PARIS, Palaiseau, France.

Physics in Medicine and Biology
|August 14, 2023
PubMed
Summary
This summary is machine-generated.

This paper introduces a faster way to model how water molecules move through cell membranes in brain scans. By using a simplified mathematical framework, researchers can now simulate these complex movements without needing to recalculate everything for every different membrane type. This improvement helps scientists better understand tissue structure using standard imaging techniques.

Keywords:
Bloch–Torrey equationdiffusion magnetic resonance imagingmatrix formalismpermeabilitytransverse magnetizationBloch-Torrey equationpermeability coefficienttissue microstructurenumerical simulation

Frequently Asked Questions

More Related Videos

Diffusion Imaging in the Rat Cervical Spinal Cord
10:46

Diffusion Imaging in the Rat Cervical Spinal Cord

Published on: April 7, 2015

11.7K
A Method for Determination and Simulation of Permeability and Diffusion in a 3D Tissue Model in a Membrane Insert System for Multi-well Plates
10:33

A Method for Determination and Simulation of Permeability and Diffusion in a 3D Tissue Model in a Membrane Insert System for Multi-well Plates

Published on: February 23, 2018

25.3K

Related Experiment Videos

Last Updated: Jul 19, 2025

In Situ Monitoring of Diffusion of Guest Molecules in Porous Media Using Electron Paramagnetic Resonance Imaging
06:34

In Situ Monitoring of Diffusion of Guest Molecules in Porous Media Using Electron Paramagnetic Resonance Imaging

Published on: September 2, 2016

6.5K
Diffusion Imaging in the Rat Cervical Spinal Cord
10:46

Diffusion Imaging in the Rat Cervical Spinal Cord

Published on: April 7, 2015

11.7K
A Method for Determination and Simulation of Permeability and Diffusion in a 3D Tissue Model in a Membrane Insert System for Multi-well Plates
10:33

A Method for Determination and Simulation of Permeability and Diffusion in a 3D Tissue Model in a Membrane Insert System for Multi-well Plates

Published on: February 23, 2018

25.3K

Area of Science:

  • Computational physics within diffusion MRI modeling
  • Biomedical engineering utilizing Laplace eigenfunctions

Background:

No prior work has fully resolved the computational burden of modeling water movement across permeable biological barriers. Standard approaches rely on solving complex equations that require heavy processing for every distinct tissue property. It was already known that the Bloch-Torrey partial differential equation describes transverse magnetization during diffusion encoding. However, existing methods struggle to efficiently estimate permeability coefficients from standard imaging data. That uncertainty drove the need for a more flexible mathematical representation of these signals. Prior research has shown that Laplace eigenfunctions provide a robust basis for describing diffusion within confined spaces. Yet, these models often assume impermeable boundaries, which fails to capture the nuances of real cellular environments. This gap motivated the development of a framework that integrates permeability without increasing the overall simulation time.

Purpose Of The Study:

The aim of this study is to develop a more efficient formulation for representing the diffusion MRI signal in permeable media. Researchers sought to address the high computational cost associated with estimating permeability coefficients from imaging data. The current problem involves the need to solve complex partial differential equations repeatedly for every potential permeability value. This motivation drove the team to explore the use of Laplace eigenfunctions derived from impermeable interfaces. By reformulating the signal representation, they intended to decouple the basis set from the specific permeability parameters. This strategy aims to enable faster forward solutions for a wide range of tissue environments. The study addresses the challenge of maintaining theoretical accuracy while improving processing speeds for clinical applications. Ultimately, the work seeks to facilitate future research into the influence of membrane permeability on diffusion imaging signals.

Main Methods:

The review approach involved developing a novel mathematical formulation for signal representation in permeable media. Researchers utilized the Laplace eigenfunctions of the medium under the assumption of impermeable interfaces. They performed a theoretical derivation to demonstrate equivalence with the original Bloch-Torrey based model. The team validated their approach through numerical simulations comparing the new formulation against established techniques. They assessed the accuracy of the model when employing both full and partial eigendecomposition strategies. Two distinct diffusion MRI sequences were selected to illustrate the practical validity of the proposed method. The study focused on optimizing the computational efficiency of forward solutions for various permeability coefficients. This design allowed for a systematic evaluation of how membrane properties impact the resulting imaging signals.

Main Results:

The researchers proved the theoretical equivalence between their new formulation and the original model when utilizing a full eigendecomposition. Key findings from the literature indicate that this approach maintains high precision while simplifying the underlying calculations. The team showed promising numerical results when applying a partial eigendecomposition to the signal representation. They successfully illustrated the validity of their method using two specific diffusion MRI sequences. The results confirm that the same basis set remains effective across different permeability values. This consistency significantly reduces the time required to compute forward solutions for complex tissue models. The data suggest that the approach reliably captures the effects of permeability on the transverse magnetization signal. These findings provide a robust framework for future investigations into tissue microstructure using standard imaging protocols.

Conclusions:

The authors established a theoretical equivalence between their novel formulation and traditional methods when using a full eigendecomposition. This synthesis suggests that the new approach maintains high accuracy while offering significant computational advantages. Their findings imply that researchers can now utilize a single set of eigenfunctions for various permeability values. This shift reduces the time required for complex simulations during data analysis. The researchers propose that this efficiency enables broader investigations into how membrane properties influence imaging signals. Their results demonstrate that even partial eigendecomposition yields promising numerical validity for practical applications. This work provides a scalable tool for future studies exploring tissue microstructure. The authors conclude that their method successfully bridges the gap between theoretical accuracy and practical computational efficiency.

The researchers propose a formulation using Laplace eigenfunctions of an impermeable medium to represent permeable diffusion. This mechanism allows the signal to be calculated efficiently across varying permeability coefficients, unlike traditional methods that require re-solving the Bloch-Torrey equation for every unique parameter value.

The authors utilize the Bloch-Torrey partial differential equation as the foundational framework. While the researchers propose using impermeable Laplace eigenfunctions for the basis, they compare this to the original formulation that accounts for permeability directly at the interface.

A full eigendecomposition is necessary to prove the theoretical equivalence between the new formulation and the original model. The researchers propose that this completeness ensures the accuracy of the signal representation, whereas a partial eigendecomposition serves as a computationally efficient approximation.

The researchers propose that the impermeable Laplace eigenfunctions act as a fixed basis set. This role enables the model to remain valid for any permeability value, contrasting with previous techniques that required updating the basis set whenever the membrane properties changed.

The authors illustrate numerical validity by applying their method to two distinct diffusion MRI sequences. They compare the results of their new formulation against the original approach to demonstrate that the model accurately captures signal behavior across different gradient configurations.

The researchers propose that this approach significantly reduces computational time. They claim this improvement enables future studies to systematically analyze the effects of permeability coefficients on imaging signals, which was previously hindered by the high cost of repeated simulations.