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Updated: Jul 19, 2025

Fluorescence-Based Measurements of Phosphatidylserine/Phosphatidylinositol 4-Phosphate Exchange Between Membranes
Published on: March 14, 2021
NME3 binds to phosphatidic acid and mediates PLD6-induced mitochondrial tethering
You-An Su1, Hsin-Yi Chiu1, Yu-Chen Chang1
1Institute of Molecular Medicine, College of Medicine, National Taiwan University , Taipei, Taiwan.
Abstract:
Mitochondria are dynamic organelles regulated by fission and fusion processes. The fusion of membranes requires elaborative coordination of proteins and lipids and is particularly crucial for the function and quality control of mitochondria. Phosphatidic acid (PA) on the mitochondrial outer membrane generated by PLD6 facilitates the fusion of mitochondria. However, how PA promotes mitochondrial fusion remains unclear. Here, we show that a mitochondrial outer membrane protein, NME3, is required for PLD6-induced mitochondrial tethering or clustering. NME3 is enriched at the contact interface of two closely positioned mitochondria depending on PLD6, and NME3 binds directly to PA-exposed lipid packing defects via its N-terminal amphipathic helix. The PA binding function and hexamerization confer NME3 mitochondrial tethering activity. Importantly, nutrient starvation enhances the enrichment efficiency of NME3 at the mitochondrial contact interface, and the tethering ability of NME3 contributes to fusion efficiency. Together, our findings demonstrate NME3 as a tethering protein promoting selective fusion between PLD6-remodeled mitochondria for quality control.
Insights
Mitochondrial fusion relies on phosphatidic acid (PA) and the protein NME3. NME3 tethers mitochondria by binding to PA, promoting fusion and quality control, especially during nutrient starvation.
Area of Science:
- Cell Biology
- Mitochondrial Dynamics
- Membrane Biology
Background:
- Mitochondria are essential organelles whose function and quality depend on dynamic fission and fusion processes.
- Phosphatidic acid (PA), generated by PLD6 on the mitochondrial outer membrane, is known to facilitate mitochondrial fusion.
- The precise mechanism by which PA promotes mitochondrial fusion remains largely unknown.
Purpose of the Study:
- To elucidate the role of the mitochondrial outer membrane protein NME3 in PA-mediated mitochondrial fusion.
- To investigate how NME3 interacts with PA and contributes to mitochondrial tethering and fusion.
Main Methods:
- Investigated the role of NME3 in PLD6-induced mitochondrial tethering using cell-based assays.
- Determined the localization and binding characteristics of NME3 at mitochondrial contact sites.
- Analyzed the function of NME3's N-terminal amphipathic helix in PA binding and tethering activity.
- Examined the effect of nutrient starvation on NME3 enrichment and mitochondrial fusion efficiency.
Main Results:
- NME3 is essential for PLD6-induced mitochondrial tethering and clustering.
- NME3 localizes to the interface between closely apposed mitochondria, dependent on PLD6.
- NME3 directly binds to PA-exposed lipid packing defects via its N-terminal amphipathic helix.
- PA binding and hexamerization of NME3 are critical for its mitochondrial tethering activity.
- Nutrient starvation enhances NME3 enrichment at mitochondrial contact sites, increasing fusion efficiency.
Conclusions:
- NME3 acts as a specific tethering protein that promotes fusion between mitochondria remodeled by PLD6.
- The interaction of NME3 with PA is a key mechanism for initiating mitochondrial tethering.
- NME3-mediated tethering contributes to selective mitochondrial fusion, crucial for organelle quality control, particularly under stress conditions like nutrient starvation.
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