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High-Throughput Cellular Profiling of Targeted Protein Degradation Compounds Using HiBiT CRISPR Cell Lines
Published on: November 9, 2020
Cetuximab-based PROteolysis targeting chimera for effectual downregulation of NSCLC with varied EGFR mutations
Richa Vartak1, Bhavesh Deore1, Carlos A Sanhueza1
1College of Pharmacy and Health Sciences, St. John's University, Queens, NY 11439, United States of America.
Abstract:
PROteolysis Targeting Chimeras (PROTACs) showed tremendous therapeutic potential in degrading several oncoproteins including undruggable proteins. PROTACs are bifunctional molecules where one-part binds to target protein while the other end recruits protein degradation machinery. With the unveiling advancements in the field of PROTACs, we explored a combinatorial approach by developing antibody-based PROTAC (ABTAC) which may effectively degrade one of the key oncoprotein driving proliferation and progression of cancer - Epidermal growth factor receptor (EGFR). The objective of current research was to synthesize and characterize an EGFR degrading ABTAC for the treatment of non-small cell lung cancer (NSCLC). Cetuximab and pomalidomide (E3 ligase recruiting ligand) were conjugated using lysine conjugation and copper free azide-alkyne cycloaddition (CuAAC) click chemistry. Analytical characterization using reverse-phase liquid chromatography and mass spectrometry suggested conjugation of five E3-ligase inhibitor molecules/antibody. Nearly 10-30 folds reduction in IC50 was observed with ABTAC in HCC827 (EGFR sensitive) and H1650 (EGFR resistant) cells compared to cetuximab. Multicellular 3D spheroid assay strongly suggested that ABTAC induced significant apoptosis and also inhibited cell proliferation compared to control and antibody alone. Circular dichroism and surface plasmon resonance (SPR) confirmed minor alterations in the structure and receptor binding efficacy of the antibody post-conjugation.
Insights
Antibody-based PROTACs (ABTACs) offer a novel approach to cancer therapy by degrading oncoproteins like EGFR. This study developed an EGFR-degrading ABTAC, showing significant efficacy in non-small cell lung cancer models.
Area of Science:
- Oncology
- Molecular Biology
- Drug Development
Background:
- PROteolysis Targeting Chimeras (PROTACs) are bifunctional molecules that harness the body's natural protein degradation pathways.
- PROTACs have shown promise in degrading oncoproteins, including those previously considered undruggable.
- Epidermal growth factor receptor (EGFR) is a key oncoprotein driving cancer proliferation and progression, particularly in non-small cell lung cancer (NSCLC).
Purpose of the Study:
- To synthesize and characterize an antibody-based PROTAC (ABTAC) designed to degrade EGFR.
- To evaluate the efficacy of the EGFR-degrading ABTAC in non-small cell lung cancer (NSCLC) models.
Main Methods:
- Conjugation of Cetuximab (antibody targeting EGFR) with Pomalidomide (E3 ligase recruiting ligand) using lysine conjugation and copper-free click chemistry (CuAAC).
- Analytical characterization via reverse-phase liquid chromatography and mass spectrometry to confirm conjugation and stoichiometry.
- In vitro efficacy assessment using IC50 determination in EGFR-sensitive and resistant NSCLC cell lines, 3D spheroid assays, circular dichroism, and surface plasmon resonance (SPR).
Main Results:
- Successful synthesis and characterization of an EGFR-degrading ABTAC, with approximately five E3-ligase inhibitor molecules conjugated per antibody.
- Significant reduction in IC50 values (10-30 fold) for the ABTAC compared to Cetuximab alone in both EGFR-sensitive (HCC827) and resistant (H1650) NSCLC cells.
- 3D spheroid assays demonstrated that the ABTAC induced significant apoptosis and inhibited cell proliferation, with minimal structural or binding alterations to the antibody.
Conclusions:
- The developed EGFR-degrading ABTAC represents a promising therapeutic strategy for non-small cell lung cancer.
- ABTACs offer a potent approach to target and degrade key oncoproteins like EGFR, overcoming resistance mechanisms.
- The conjugation strategy and characterization methods provide a robust framework for developing future antibody-based targeted protein degraders.
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