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Updated: Jul 18, 2025

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On-Site Molecular Detection of Soil-Borne Phytopathogens Using a Portable Real-Time PCR System
Published on: February 23, 2018
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Next-generation methods for early disease detection in crops
Daniela Trippa1, Riccardo Scalenghe1, Marcos Fernando Basso2
1Dipartimento di Scienze Agrarie Alimentari e Forestali, Università degli Studi di Palermo, Palermo, Italy.
Pest Management Science
|August 20, 2023
Summary
Early detection of plant pathogens is crucial for effective disease management. This review compares traditional methods like ELISA and nucleic acid-based techniques with innovative field-deployable tools such as lateral flow systems and portable PCR.
Area of Science:
- Plant Pathology
- Agricultural Science
- Biotechnology
Background:
- Accurate identification of plant pathogens is vital for disease control and preventing agricultural losses.
- Traditional diagnostic methods often lack sensitivity, especially during early or asymptomatic infection stages.
- Efficient pathogen detection underpins effective management strategies to mitigate disease spread and impact.
Purpose of the Study:
- To review and discuss traditional and innovative methods for early plant pathogen detection.
- To highlight the advantages and limitations of various diagnostic techniques.
- To provide insights into current methodologies for effective plant pathogen identification.
Main Methods:
- Review of traditional diagnostic techniques including serological methods (e.g., ELISA) and molecular methods (DNA, RNA).
- Evaluation of innovative detection tools such as lateral flow systems and portable PCR assays.
- Discussion of pathogen detection based on pathogen components like nucleic acids and proteins.
Main Results:
- Enzyme-linked immunosorbent assay (ELISA) offers high-throughput and low cost but lacks sensitivity for asymptomatic infections.
- Nucleic acid-based technologies are reliable for non-cultivable pathogens.
- Innovative tools like lateral flow systems and portable PCR provide rapid, in-field results but require further sensitivity improvements.
Conclusions:
- Portable diagnostic instruments have the potential to accelerate pathogen detection, reduce costs, and transform plant pathology practices.
- A comprehensive understanding of method advantages and limitations is key to selecting appropriate detection strategies.
- Continued innovation in diagnostic tools is essential for timely and accurate plant pathogen identification.

