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Related Concept Videos

Regulation of Nuclear Protein Sorting01:45

Regulation of Nuclear Protein Sorting

2.4K
Nuclear protein sorting regulates nucleus composition and gene expression, crucial for determining the fate of a eukaryotic cell. Hence, the entry and exit of molecules across the nuclear envelope is a tightly controlled process. Nuclear protein sorting can be inhibited by one of the following ways: 1) masking cargo signal sequences, 2) modifying the nuclear receptor's affinity for cargo, 3) controlling the nuclear pore size, 4) retaining the cargo during its transit to the cytosol or the...
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Nuclear Export of mRNA02:31

Nuclear Export of mRNA

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Before mRNAs are exported to the cytoplasm, it is crucial to check each mRNA for structural and functional integrity. Eukaryotic cells use several different mechanisms, collectively known as mRNA surveillance, to look for irregularities in mRNAs. Irregular or aberrant mRNA are rapidly degraded by various enzymes. If a defective mRNA escapes the surveillance, it would be translated into a protein which would either be non-functional or not function properly. One of the primary irregularities in...
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Chromatin Structure Regulates pre-mRNA Processing02:41

Chromatin Structure Regulates pre-mRNA Processing

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In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
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Nucleosome Remodeling02:54

Nucleosome Remodeling

9.2K
Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
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Nuclear Protein Sorting01:34

Nuclear Protein Sorting

4.7K
Nuclear protein sorting is the selective trafficking of histones, polymerases, gene regulatory proteins into the nucleus and exporting RNAs and ribosomes to the cytosol. It is a tightly controlled process that regulates gene expression within a cell.
Proteins targeted to the nucleus carry nuclear localization signals or NLS recognized by import receptors in the cytosol. Similarly, proteins with nuclear export signals are recognized by export receptors. Import and export receptors are...
4.7K
Chromatin Position Affects Gene Expression02:35

Chromatin Position Affects Gene Expression

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Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences  access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area. 
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
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Chromatin endogenous cleavage provides a global view of yeast RNA polymerase II transcription kinetics.

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Related Experiment Video

Updated: Jul 18, 2025

Repressing Gene Transcription by Redirecting Cellular Machinery with Chemical Epigenetic Modifiers
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Repressing Gene Transcription by Redirecting Cellular Machinery with Chemical Epigenetic Modifiers

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The nuclear pore complex as a platform for epigenetic regulation.

Jason H Brickner1

  • 1Department of Molecular Biosciences, Northwestern University, Evanston, IL, USA.

The Journal of Cell Biology
|August 21, 2023
PubMed
Summary

The nuclear pore complex (NPC) regulates gene expression by interacting with chromatin. This study reveals how NPC-mediated epigenetic silencing involves the replication factor PCNA.

Area of Science:

  • Cell Biology
  • Molecular Biology
  • Epigenetics

Background:

  • The nuclear pore complex (NPC) controls transport between the nucleus and cytoplasm.
  • NPCs interact with chromatin, influencing gene transcription and epigenetic regulation.
  • Understanding NPC's role in epigenetic silencing is crucial for cell biology.

Purpose of the Study:

  • To elucidate the molecular mechanisms underlying NPC-mediated epigenetic silencing.
  • To investigate the role of the replication processivity factor PCNA in this process.

Main Methods:

  • The study by Kumar et al. (2023) utilized molecular and cellular biology techniques.
  • Investigated the interaction between NPCs and chromatin.
  • Focused on the loading mechanism of PCNA.

More Related Videos

DamID-seq: Genome-wide Mapping of Protein-DNA Interactions by High Throughput Sequencing of Adenine-methylated DNA Fragments
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Formaldehyde-assisted Isolation of Regulatory Elements to Measure Chromatin Accessibility in Mammalian Cells
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Formaldehyde-assisted Isolation of Regulatory Elements to Measure Chromatin Accessibility in Mammalian Cells

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Related Experiment Videos

Last Updated: Jul 18, 2025

Repressing Gene Transcription by Redirecting Cellular Machinery with Chemical Epigenetic Modifiers
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Repressing Gene Transcription by Redirecting Cellular Machinery with Chemical Epigenetic Modifiers

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DamID-seq: Genome-wide Mapping of Protein-DNA Interactions by High Throughput Sequencing of Adenine-methylated DNA Fragments
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Formaldehyde-assisted Isolation of Regulatory Elements to Measure Chromatin Accessibility in Mammalian Cells
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Formaldehyde-assisted Isolation of Regulatory Elements to Measure Chromatin Accessibility in Mammalian Cells

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Main Results:

  • New insights into the molecular basis of NPC-mediated epigenetic silencing.
  • Demonstrated the involvement of PCNA loading in this silencing pathway.
  • Detailed the physical interaction between NPCs and chromatin for transcriptional regulation.

Conclusions:

  • NPCs play a significant role in epigenetic silencing.
  • PCNA loading is a key molecular event in NPC-mediated transcriptional regulation.
  • This research advances our understanding of nuclear transport and gene expression control.