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Updated: Jul 18, 2025

Identification of Small Molecule-binding Proteins in a Native Cellular Environment by Live-cell Photoaffinity Labeling
Published on: September 20, 2016
Protein-Protein Interaction in Multicomponent Reaction Enables Chemoselective, Site-Selective, and Modular Labeling
Rajib Molla1, Pralhad N Joshi1, Neelesh C Reddy1
1Department of Chemistry, Indian Institute of Science Education and Research (IISER) Bhopal, Bhopal Bypass Road, Bhauri, Bhopal, 462 066, M.P., India.
Harnessing protein-protein interactions (PPI) enables selective single-site protein modification. This method uses reversible intermediates and PPI specificity for precise, late-stage probe installation.
Area of Science:
- Chemical Biology
- Protein Engineering
- Biochemistry
Background:
- Single-site protein modification is challenging due to diverse protein functionalities.
- Existing methods often lack specificity or are difficult to implement.
- Controlling modification sites is crucial for understanding protein function and engineering new ones.
Purpose of the Study:
- To develop a novel method for achieving site-selective protein modification.
- To leverage protein-protein interactions (PPI) for directing chemical modifications.
- To enable late-stage installation of mono- and dual-probes onto proteins.
Main Methods:
- Utilized chemoselective, reversible generation of reactive intermediates.
- Employed protein-protein interaction specificity to guide irreversible modification.
- Applied a multicomponent aza-Morita-Baylis-Hillman (aza-MBH) reaction driven by dis(in)tegrate (DIN) theory.
Main Results:
- Achieved homogeneous and modular single-site protein modification.
- Demonstrated the ability to install mono- and dual-probes at a specific site.
- Successfully harnessed PPI to drive site-selective chemical reactions.
Conclusions:
- The developed method offers a powerful strategy for precise protein engineering.
- This approach overcomes limitations of traditional single-site modification techniques.
- The DIN theory-driven aza-MBH reaction provides a versatile platform for protein functionalization.
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