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Persistent homology-based descriptor for machine-learning potential of amorphous structures.

Emi Minamitani1,2,3, Ippei Obayashi3,4, Koji Shimizu5

  • 1The Institute of Scientific and Industrial Research, Osaka University, Ibaraki 567-0047, Japan.

The Journal of Chemical Physics
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Summary
This summary is machine-generated.

We introduce a novel descriptor using persistent homology (PH) for machine-learning potentials. This method accurately predicts amorphous material properties, offering a simpler alternative to complex deep learning techniques.

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Area of Science:

  • Condensed-matter physics
  • Materials science
  • Computational physics

Background:

  • Predicting amorphous material properties is difficult.
  • Machine-learning potentials offer an alternative to computationally intensive ab initio calculations.
  • Effective descriptors for atomic configurations are crucial for machine-learning potentials.

Purpose of the Study:

  • To propose a novel descriptor for machine-learning potentials based on persistent homology (PH).
  • To evaluate the descriptor's ability to predict physical properties of amorphous materials.
  • To compare the descriptor's characteristics with existing methods like graph neural networks (GNNs).

Main Methods:

  • Utilized persistence diagrams (PD), a 2D representation of PH, to construct descriptors.
  • Normalized 2D histograms from PD were used to represent atomic configurations.
  • Analyzed dimensional reduction of descriptor spaces to understand their properties.

Main Results:

  • The proposed descriptor accurately predicted the average energy per atom of amorphous carbon.
  • The descriptor performed well even with a simple predictive model.
  • Dimensional reduction analysis showed PH descriptors share characteristics with GNN latent spaces.

Conclusions:

  • Persistent homology provides a promising approach for developing symmetry-invariant descriptors for machine-learning potentials.
  • This method bypasses the need for hyperparameter tuning and deep-learning architectures.
  • PH offers a simpler yet effective alternative for materials property prediction.