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Related Concept Videos

Ionic Crystal Structures02:42

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Ionic crystals consist of two or more different kinds of ions that usually have different sizes. The packing of these ions into a crystal structure is more complex than the packing of metal atoms that are the same size.
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Crystallization is a phase transformation process in which crystals are precipitated from a supersaturated solution or formed from other sources. During crystallization, atoms or molecules arrange themselves into a well-defined, rigid crystal lattice to minimize energy.
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Solids in which the atoms, ions, or molecules are arranged in a definite repeating pattern are known as crystalline solids. Metals and ionic compounds typically form ordered, crystalline solids. A crystalline solid has a precise melting temperature because each atom or molecule of the same type is held in place with the same forces or energy. Amorphous solids or non-crystalline solids (or, sometimes, glasses) which lack an ordered internal structure and are randomly arranged. Substances that...
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Crystal Field Theory - Tetrahedral and Square Planar Complexes02:46

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Tetrahedral Complexes
Crystal field theory (CFT) is applicable to molecules in geometries other than octahedral. In octahedral complexes, the lobes of the dx2−y2 and dz2 orbitals point directly at the ligands. For tetrahedral complexes, the d orbitals remain in place, but with only four ligands located between the axes. None of the orbitals points directly at the tetrahedral ligands. However, the dx2−y2 and dz2 orbitals (along the Cartesian axes) overlap with the ligands less than the dxy,...
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Renal calculi, commonly termed kidney stones, are crystalline solid masses that form in the kidneys but can occur at any point within the urinary system, encompassing the kidneys, ureters, bladder, and urethra.The pathophysiology of renal stones involves several key factors: supersaturation of the urine with stone-forming constituents, changes in urine pH, a decrease in urine volume, and the presence of substances that promote or inhibit stone formation.Supersaturation of Urine: This is the...
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Crystal Field Theory - Octahedral Complexes02:58

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Crystal Field Theory
To explain the observed behavior of transition metal complexes (such as colors), a model involving electrostatic interactions between the electrons from the ligands and the electrons in the unhybridized d orbitals of the central metal atom has been developed. This electrostatic model is crystal field theory (CFT). It helps to understand, interpret, and predict the colors, magnetic behavior, and some structures of coordination compounds of transition metals.
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Estimation of Urinary Nanocrystals in Humans using Calcium Fluorophore Labeling and Nanoparticle Tracking Analysis
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Pathological crystal structures.

Kenneth N Raymond1, Gregory S Girolami2

  • 1Department of Chemistry, University of California, Berkeley, California 94720, USA.

Acta Crystallographica. Section C, Structural Chemistry
|August 23, 2023
PubMed
Summary
This summary is machine-generated.

Interpreting crystal structure analysis requires both crystallography and chemistry knowledge, as software alone cannot detect all errors. Recognizing common mistakes in published structures is crucial for accurate scientific data.

Keywords:
atom misassignmentscheckCIFcrystallographic errorsdisordered guest moleculesincorrect cell sizeincorrect modelingincorrect space group

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Area of Science:

  • Crystallography
  • Chemical Analysis
  • Structural Chemistry

Background:

  • Crystal structure analysis technology has advanced significantly.
  • Human interpretation remains critical in analyzing crystallographic data.
  • Current software tools can identify some errors, but not all.

Purpose of the Study:

  • To highlight common errors in published crystal structure analyses.
  • To emphasize the necessity of combining crystallographic and chemical knowledge for error detection.
  • To educate researchers on identifying potentially flawed structural data.

Main Methods:

  • Review and categorization of errors from published crystallographic literature.
  • Analysis of specific examples illustrating common pitfalls.
  • Discussion of lessons learned from erroneous crystal structure determinations.

Main Results:

  • Identified categories of errors include incorrect chemistry, atom misassignment, and improper space group or unit-cell selection.
  • Demonstrated that errors persist despite technological advancements in crystallography.
  • Highlighted specific case studies of 'pathological structures'.

Conclusions:

  • Crystal structures should not be assumed infallible; critical evaluation is necessary.
  • A combined understanding of crystallography and chemistry is essential for robust data interpretation.
  • Awareness of common error types aids in detecting and preventing flawed structural analyses.