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Genome-Wide CRISPR Screen for Unveiling Radiosensitive and Radioresistant Genes
Published on: May 23, 2025
CRISPR screens decode cancer cell pathways that trigger γδ T cell detection
Murad R Mamedov1,2, Shane Vedova3,4, Jacob W Freimer3,4,5
1Gladstone-UCSF Institute of Genomic Immunology, San Francisco, CA, USA. murad.mamedov@ucsf.edu.
Abstract:
γδ T cells are potent anticancer effectors with the potential to target tumours broadly, independent of patient-specific neoantigens or human leukocyte antigen background1-5. γδ T cells can sense conserved cell stress signals prevalent in transformed cells2,3, although the mechanisms behind the targeting of stressed target cells remain poorly characterized. Vγ9Vδ2 T cells-the most abundant subset of human γδ T cells4-recognize a protein complex containing butyrophilin 2A1 (BTN2A1) and BTN3A1 (refs. 6-8), a widely expressed cell surface protein that is activated by phosphoantigens abundantly produced by tumour cells. Here we combined genome-wide CRISPR screens in target cancer cells to identify pathways that regulate γδ T cell killing and BTN3A cell surface expression. The screens showed previously unappreciated multilayered regulation of BTN3A abundance on the cell surface and triggering of γδ T cells through transcription, post-translational modifications and membrane trafficking. In addition, diverse genetic perturbations and inhibitors disrupting metabolic pathways in the cancer cells, particularly ATP-producing processes, were found to alter BTN3A levels. This induction of both BTN3A and BTN2A1 during metabolic crises is dependent on AMP-activated protein kinase (AMPK). Finally, small-molecule activation of AMPK in a cell line model and in patient-derived tumour organoids led to increased expression of the BTN2A1-BTN3A complex and increased Vγ9Vδ2 T cell receptor-mediated killing. This AMPK-dependent mechanism of metabolic stress-induced ligand upregulation deepens our understanding of γδ T cell stress surveillance and suggests new avenues available to enhance γδ T cell anticancer activity.
Insights
Gamma delta (γδ) T cells target cancer by recognizing stress signals. Activating AMP-activated protein kinase (AMPK) boosts cancer cell stress signals, enhancing γδ T cell killing.
Area of Science:
- Immunology
- Cancer Biology
- Cellular Metabolism
Background:
- γδ T cells are potent anticancer effectors recognizing conserved stress signals on transformed cells.
- Vγ9Vδ2 T cells, a major human γδ T cell subset, recognize the BTN2A1-BTN3A1 complex on target cells.
- Mechanisms linking cancer cell stress to γδ T cell targeting are not fully understood.
Purpose of the Study:
- To identify pathways regulating γδ T cell killing and BTN3A expression in cancer cells.
- To elucidate the role of cellular metabolism in γδ T cell-mediated cytotoxicity.
- To explore therapeutic strategies for enhancing γδ T cell anticancer activity.
Main Methods:
- Genome-wide CRISPR screens in target cancer cells.
- Analysis of gene expression, protein modifications, and membrane trafficking.
- Investigation of metabolic pathway disruptions and AMP-activated protein kinase (AMPK) signaling.
- Assessment of Vγ9Vδ2 T cell killing in cell line and patient-derived tumor organoid models.
Main Results:
- CRISPR screens revealed multilayered regulation of BTN3A cell surface expression and γδ T cell activation.
- Disruption of cancer cell metabolic pathways, especially ATP production, altered BTN3A levels.
- AMPK activation by metabolic stress induces BTN2A1 and BTN3A expression.
- AMPK activation in cancer models increased BTN2A1-BTN3A complex expression and Vγ9Vδ2 T cell killing.
Conclusions:
- Metabolic stress in cancer cells, mediated by AMPK, upregulates the BTN2A1-BTN3A complex.
- This AMPK-dependent mechanism enhances Vγ9Vδ2 T cell recognition and killing of cancer cells.
- Targeting metabolic pathways and activating AMPK offers a novel strategy to boost γδ T cell immunotherapy.
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