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Updated: Jul 17, 2025

Profiling of Estrogen-regulated MicroRNAs in Breast Cancer Cells
Published on: February 21, 2014
MicroRNA regulation of the serine synthesis pathway in endocrine-resistant breast cancer cells
Belinda J Petri1, Kellianne M Piell1, Ali E Wilt1
1Department of Biochemistry & Molecular Genetics, University of Louisville School of Medicine Louisville, Kentucky, USA.
Abstract:
Despite the successful combination of therapies improving survival of estrogen receptor α (ER+) breast cancer patients with metastatic disease, mechanisms for acquired endocrine resistance remain to be fully elucidated. The RNA binding protein HNRNPA2B1 (A2B1), a reader of N(6)-methyladenosine (m6A) in transcribed RNA, is upregulated in endocrine-resistant, ER+ LCC9 and LY2 cells compared to parental MCF-7 endocrine-sensitive luminal A breast cancer cells. The miRNA-seq transcriptome of MCF-7 cells overexpressing A2B1 identified the serine metabolic processes pathway. Increased expression of two key enzymes in the serine synthesis pathway (SSP), phosphoserine aminotransferase 1 (PSAT1) and phosphoglycerate dehydrogenase (PHGDH), correlates with poor outcomes in ER+ breast patients who received tamoxifen (TAM). We reported that PSAT1 and PHGDH were higher in LCC9 and LY2 cells compared to MCF-7 cells and their knockdown enhanced TAM sensitivity in these-resistant cells. Here we demonstrate that stable, modest overexpression of A2B1 in MCF-7 cells increased PSAT1 and PHGDH and endocrine resistance. We identified four miRNAs downregulated in MCF-7-A2B1 cells that directly target the PSAT1 3'UTR (miR-145-5p and miR-424-5p), and the PHGDH 3'UTR (miR-34b-5p and miR-876-5p) in dual luciferase assays. Lower expression of miR-145-5p and miR-424-5p in LCC9 and ZR-75-1-4-OHT cells correlated with increased PSAT1 and lower expression of miR-34b-5p and miR-876-5p in LCC9 and ZR-75-1-4-OHT cells correlated with increased PHGDH. Transient transfection of these miRNAs restored endocrine-therapy sensitivity in LCC9 and ZR-75-1-4-OHT cells. Overall, our data suggest a role for decreased A2B1-regulated miRNAs in endocrine resistance and upregulation of the SSP to promote tumor progression in ER+ breast cancer.
Insights
The RNA binding protein HNRNPA2B1 (A2B1) promotes endocrine resistance in ER+ breast cancer by downregulating specific miRNAs that control serine synthesis enzymes. Restoring these miRNAs re-sensitizes cancer cells to therapy.
Area of Science:
- Oncology
- Molecular Biology
- Biochemistry
Background:
- Estrogen receptor α (ER+) breast cancer with metastatic disease shows improved survival with combination therapies, yet acquired endocrine resistance mechanisms are not fully understood.
- The RNA binding protein HNRNPA2B1 (A2B1), an N(6)-methyladenosine (m6A) reader, is upregulated in endocrine-resistant ER+ breast cancer cells.
- Increased expression of serine synthesis pathway (SSP) enzymes, PSAT1 and PHGDH, correlates with poor outcomes in ER+ breast cancer patients treated with tamoxifen.
Purpose of the Study:
- To investigate the role of HNRNPA2B1 (A2B1) in acquired endocrine resistance in ER+ breast cancer.
- To elucidate the molecular mechanisms linking A2B1, miRNA dysregulation, and the serine synthesis pathway (SSP) in endocrine resistance.
- To determine if restoring specific miRNAs can overcome endocrine resistance in ER+ breast cancer cells.
Main Methods:
- Comparative analysis of HNRNPA2B1 (A2B1) expression in endocrine-sensitive versus resistant ER+ breast cancer cells.
- miRNA sequencing (miRNA-seq) to identify miRNAs affected by A2B1 overexpression.
- Dual luciferase assays to confirm miRNA targeting of PSAT1 and PHGDH 3'UTRs.
- Assessment of tamoxifen (TAM) sensitivity following A2B1 overexpression or miRNA transfection.
Main Results:
- Stable overexpression of A2B1 in MCF-7 cells increased PSAT1 and PHGDH expression and induced endocrine resistance.
- Four miRNAs (miR-145-5p, miR-424-5p, miR-34b-5p, miR-876-5p) were identified as downregulated in A2B1-overexpressing cells and directly target PSAT1 and PHGDH.
- Lower expression of these specific miRNAs in resistant cell lines correlated with increased PSAT1 and PHGDH levels.
- Transient transfection of these miRNAs restored endocrine therapy sensitivity in resistant ER+ breast cancer cells.
Conclusions:
- Decreased expression of A2B1-regulated miRNAs contributes to endocrine resistance in ER+ breast cancer.
- Upregulation of the serine synthesis pathway (SSP) via A2B1-mediated miRNA suppression promotes tumor progression.
- Targeting the A2B1-miRNA-SSP axis offers a potential therapeutic strategy to overcome endocrine resistance in ER+ breast cancer.
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