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Updated: Jul 17, 2025

A Method for Measuring RNA N6-methyladenosine Modifications in Cells and Tissues
Published on: December 5, 2016
RNA N6-methyladenosine reader IGF2BP3 promotes acute myeloid leukemia progression by controlling stabilization of
Jin Fan1, Mengqi Zhuang2, Wei Fan3
1Qilu Hospital of Shandong University, Jinan, China.
Background:
N6-methyladenosine (m6A) methylation epigenetically regulates normal hematopoiesis and plays a role in the pathogenesis of acute myeloid leukemia (AML). However, its potential value for prognosis remains elusive.
Methods:
Analysis of the datasets downloaded from The Cancer Genome Atlas and Genotype Tissue Expression databases revealed that the expression level of 20 regulators related to m6A RNA methylation differ between patients with AML and normal individuals. A prognostic risk model with three genes (YTHDF3, IGF2BP3, and HNRNPA2B1) was developed using univariate Cox regression and the least absolute shrinkage and selection operator Cox regression methods.
Results:
This established signature demonstrated good predictive efficacy with an area under the curve of 0.892 and 0.731 in the training cohort and the validation cohort, respectively. Patients with AML and an increased level of Insulin growth factor 2 mRNA binding protein 3 (IGF2BP3) expression exhibited a poor prognosis. IGF2BP3 knockdown significantly induced G0/G1 phase arrest and inhibited cell proliferation, apoptosis, and/or differentiation. Further, the JAK/STAT pathway may be involved in the regulation of EPOR expression by IGF2BP3-mediated m6A RNA methylation.
Conclusion:
These findings indicate that IGF2BP3 plays a carcinogenic role in AML, implying that it can predict patient survival and could be an effective strategy for AML therapy.
Insights
N6-methyladenosine (m6A) RNA methylation is implicated in acute myeloid leukemia (AML) pathogenesis. A novel prognostic model identified IGF2BP3 as a key regulator, predicting poor survival and offering a potential therapeutic target for AML.
Area of Science:
- Oncology
- Epigenetics
- Molecular Biology
Background:
- N6-methyladenosine (m6A) methylation influences normal hematopoiesis and acute myeloid leukemia (AML) development.
- The prognostic significance of m6A regulators in AML remains largely undetermined.
Purpose of the Study:
- To investigate the role of m6A RNA methylation regulators in AML.
- To develop a prognostic model for AML based on m6A methylation regulators.
Main Methods:
- Analysis of The Cancer Genome Atlas and Genotype Tissue Expression datasets.
- Development of a prognostic risk model using univariate Cox regression and LASSO Cox regression.
- Gene expression analysis and functional experiments (e.g., gene knockdown).
Main Results:
- Expression of 20 m6A regulators differed between AML patients and healthy individuals.
- A three-gene signature (YTHDF3, IGF2BP3, HNRNPA2B1) demonstrated predictive efficacy (AUC 0.892 training, 0.731 validation).
- High IGF2BP3 expression correlated with poor prognosis, induced cell cycle arrest, and inhibited proliferation/apoptosis/differentiation, potentially via the JAK/STAT pathway.
Conclusions:
- IGF2BP3 exhibits oncogenic properties in AML.
- IGF2BP3 serves as a potential biomarker for predicting AML patient survival.
- Targeting IGF2BP3 may represent a viable therapeutic strategy for AML.
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