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Updated: Jul 17, 2025

An Integrated Approach for Microprotein Identification and Sequence Analysis
Published on: July 12, 2022
LINC00116-encoded microprotein mitoregulin regulates fatty acid metabolism at the mitochondrial outer membrane
Shan Zhang1,2, Yabo Guo1, Gio Fidelito2
1Department of Biochemistry, Department of Cardiology of The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou 310058, China.
Abstract:
LINC00116 encodes a microprotein first identified as Mitoregulin (MTLN), where it was reported to localize to the inner membrane of mitochondria to regulate fatty acid oxidation and oxidative phosphorylation. These initial discoveries were followed by reports with differing findings about its molecular functions and submitochondrial localization. To clarify the apparent discrepancies, we constructed multiple orthogonal methods of determining the localization of MTLN, including split GFP-based reporters that enable efficient and reliable topology analyses for microproteins. These methods unequivocally demonstrate MTLN primarily localizes to the outer membrane of mitochondria, where it interacts with enzymes of fatty acid metabolism including CPT1B and CYB5B. Loss of MTLN causes the accumulation of very long-chain fatty acids (VLCFAs), especially docosahexaenoic acid (DHA). Intriguingly, loss of MTLN protects mice against western diet/fructose-induced insulin-resistance, suggests a protective effect of VLCFAs in this context. MTLN thus serves as an attractive target to control the catabolism of VLCFAs.
Insights
The microprotein Mitoregulin (MTLN), encoded by LINC00116, localizes to the outer mitochondrial membrane. Loss of MTLN impacts fatty acid metabolism and protects against insulin resistance.
Area of Science:
- Mitochondrial biology
- Molecular genetics
- Metabolic regulation
Background:
- The microprotein Mitoregulin (MTLN), encoded by LINC00116, was initially reported to localize to the inner mitochondrial membrane and regulate energy metabolism.
- Conflicting reports exist regarding MTLN's precise submitochondrial localization and molecular functions, necessitating clarification.
Purpose of the Study:
- To definitively determine the submitochondrial localization of MTLN.
- To elucidate the molecular function of MTLN in relation to fatty acid metabolism.
- To investigate the physiological consequences of MTLN loss, particularly in the context of metabolic disease.
Main Methods:
- Utilized orthogonal methods, including split GFP-based reporters, for accurate microprotein topology analysis.
- Investigated protein-protein interactions of MTLN with enzymes involved in fatty acid metabolism.
- Assessed the impact of MTLN loss on very long-chain fatty acid (VLCFA) levels and insulin sensitivity in mice.
Main Results:
- Unequivocally demonstrated MTLN's primary localization to the outer mitochondrial membrane.
- Identified interactions between MTLN and fatty acid metabolism enzymes CPT1B and CYB5B.
- Observed accumulation of VLCFAs, including docosahexaenoic acid (DHA), upon MTLN loss.
- Showed that MTLN deficiency confers protection against diet-induced insulin resistance in mice.
Conclusions:
- MTLN is an outer mitochondrial membrane protein that regulates VLCFA metabolism.
- MTLN deficiency protects against diet-induced insulin resistance, highlighting a role for VLCFAs in this protective effect.
- MTLN represents a potential therapeutic target for modulating VLCFA catabolism and metabolic health.
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