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Updated: Jul 17, 2025

Performing Data Mining And Integrative Analysis Of Biomarker in Breast Cancer Using Multiple Publicly Accessible Databases
Published on: May 17, 2019
Comprehensive analysis of ACKR family members in breast cancer using prognostic values
Lixian Yang1, Shiyu Zhang1, Pengpeng Pu1
1Department of Breast Surgery, Xingtai People's Hospital, Xingtai, Hebei 054000, P.R. China.
Abstract:
Breast cancer (BC) is by far the most prevalent malignancy found in the female population. Atypical chemokine receptors (ACKRs) are a subclass of G-protein-coupled receptors, which are characterized by disrupted ligand binding and a breakdown of signaling following ligand binding. The evolution and function of multiple ACKRs in BC have yet to be fully elucidated, although certain findings on this family have been reported in several studies in Homo sapiens and other species. The present study identified that the expression level of ACKRs was significantly lower in breast carcinoma (BRCA) tissues compared with normal breast tissues through searches of the Tumor Immune Estimation Resource, UALCAN and Gene Expression Profiling Interactive Analysis databases. Additionally, when comparing BRCA tissues with normal breast tissues, it was found that there was obvious hypomethylation in the promoters of ACKR1, ACKR3 and ACKR5, as well as a marked hypermethylation in the promoters of ACKR2 and ACKR6. In determining the prognosis of patients with BRCA, the expression levels of ACKR1, ACKR2, ACKR3, ACKR4 and ACKR6 were all found to be important factors. The values for distant metastasis-free survival (DMFS), overall survival (OS) and recurrence-free survival (RFS) were all found to be lower in patients with BRCA who had a low expression level of ACKR1. In addition, the RFS rates for patients with BRCA were lower when the expression of ACKR2 was low, and worse values for DMFS, OS and RFS were found to be highly correlated with higher expression levels of ACKR3. Moreover, the DMFS, OS, RFS and predictive power score values were worse in those patients with low ACKR4 expression, and the RFS values for patients with BRCA were also found to be lower when the expression level of ACKR6 was low. Additionally, dendritic cells, macrophages, neutrophils, T cells with CD4+ status, T cells with CD8+ status and B cells were all substantially linked with ACKR expression, as well as immune cell infiltration. Taken together, the findings of the present study may offer a theoretical foundation for the creation of novel targets and prognostic indicators for BRCA therapy.
Insights
Atypical chemokine receptors (ACKRs) show altered expression and methylation in breast cancer, impacting patient survival. These receptors are linked to immune cell infiltration, suggesting potential as prognostic indicators for breast cancer therapy.
Area of Science:
- Oncology
- Immunology
- Genetics
Background:
- Breast cancer (BC) is a leading female malignancy.
- Atypical chemokine receptors (ACKRs) are G-protein-coupled receptors with poorly understood roles in BC.
- Previous studies have reported some findings on ACKRs in BC.
Purpose of the Study:
- To investigate the expression and methylation patterns of ACKRs in breast carcinoma (BRCA).
- To determine the prognostic significance of ACKR expression in BRCA patients.
- To explore the relationship between ACKR expression and immune cell infiltration in BRCA.
Main Methods:
- Utilized Tumor Immune Estimation Resource, UALCAN, and Gene Expression Profiling Interactive Analysis databases.
- Analyzed ACKR expression levels and promoter methylation in BRCA versus normal tissues.
- Correlated ACKR expression with distant metastasis-free survival (DMFS), overall survival (OS), and recurrence-free survival (RFS).
Main Results:
- ACKR expression was significantly lower in BRCA tissues compared to normal tissues.
- Hypomethylation of ACKR1, ACKR3, ACKR5 and hypermethylation of ACKR2, ACKR6 promoters were observed in BRCA.
- Expression levels of ACKR1, ACKR2, ACKR3, ACKR4, and ACKR6 were significantly associated with patient survival outcomes (DMFS, OS, RFS).
- ACKR expression correlated with infiltration of immune cells like dendritic cells, macrophages, neutrophils, and T cells (CD4+, CD8+).
Conclusions:
- ACKR expression and methylation are altered in breast cancer.
- ACKRs serve as potential prognostic biomarkers for BRCA.
- ACKRs may represent novel therapeutic targets in breast cancer, potentially through modulation of the tumor immune microenvironment.
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