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Updated: Jul 22, 2026

Identification of Protein Interacting Partners Using Tandem Affinity Purification
Published on: February 25, 2012
Antiviral Drug Target Identification and Ligand Discovery.
Hershna Patel1, Dipankar Sengupta2
1School of Life and Medical Sciences, University of Hertfordshire, Hatfield, UK. h.patel28@herts.ac.uk.
This chapter guides antiviral drug discovery by detailing web resources for obtaining viral protein structures and using molecular docking. It covers ligand searching, screening, and library preparation with free, open-source tools.
Area of Science:
- Computational chemistry
- Drug discovery
- Bioinformatics
Background:
- Antiviral drug discovery relies on identifying and validating viral protein targets.
- Molecular docking is a key computational technique for predicting drug-target interactions.
- Access to specialized web resources is crucial for efficient drug discovery workflows.
Purpose of the Study:
- To provide a comprehensive overview of web-based resources for antiviral drug discovery.
- To guide researchers in utilizing computational tools for identifying potential antiviral agents.
- To highlight free, online, open-source resources for various stages of drug discovery.
Main Methods:
- Explaining methods for obtaining viral protein target structures.
- Detailing considerations for receptor-based molecular docking.
- Discussing resources for ligand searching, screening, and analogue library preparation.
Main Results:
- Identification of key web-based resources for each step of the antiviral drug discovery process.
- Emphasis on the utility of free, online, and open-source tools.
- Practical guidance on applying molecular docking techniques.
Conclusions:
- Web-based resources significantly facilitate antiviral drug discovery.
- Free and open-source tools offer accessible solutions for researchers.
- A structured approach using these resources can accelerate the identification of novel antiviral drugs.
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