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Updated: Jul 16, 2025

A Mass Spectrometry-Based Approach to Identify Phosphoprotein Phosphatases and their Interactors
Published on: April 29, 2022
Molecular Mechanism of PP2A/B55α Phosphatase Inhibition by IER5
Ruili Cao1, Daniel Td Jones1, Li Pan2
1Department of Biological Chemistry and Molecular Pharmacology, Blavatnik Institute, Harvard Medical School, Boston, MA, USA.
Abstract:
PP2A serine/threonine phosphatases are heterotrimeric complexes that execute many essential physiologic functions. These activities are modulated by additional regulatory proteins, such as ARPP19, FAM122A, and IER5. Here, we report the cryoelectron microscopy structure of a complex of PP2A/B55α with the N-terminal structured region of IER5 (IER5-N50), which occludes a surface on B55α used for substrate recruitment, and show that IER5-N50 inhibits PP2A/B55α catalyzed dephosphorylation of pTau in biochemical assays. Mutations of full-length IER5 that disrupt its PP2A/B55α interface interfere with co-immunoprecipitation of PP2A/B55α. These mutations and deletions that remove the nuclear localization sequence of IER5 suppress cellular events such as KRT1 expression that depend on association of IER5 with PP2A/B55α. Querying the Alphafold2 predicted structure database identified SERTA domain proteins as high-confidence PP2A/B55α-binding structural homologs of IER5-N50. These studies define the molecular basis of PP2A/B55α inhibition by IER5-family proteins and suggest a roadmap for selective pharmacologic modulation of PP2A/B55α complexes.
Insights
The study reveals how IER5 protein inhibits PP2A/B55α phosphatase activity by blocking substrate binding. This finding clarifies the molecular mechanism of PP2A/B55α regulation and suggests new therapeutic targets.
Area of Science:
- Biochemistry
- Structural Biology
- Cell Biology
Background:
- Protein phosphatase 2A (PP2A) are crucial serine/threonine phosphatases regulating numerous physiological processes.
- PP2A activity is fine-tuned by regulatory subunits and associated proteins, including IER5.
- Dysregulation of PP2A is implicated in various diseases, highlighting the need for understanding its regulation.
Purpose of the Study:
- To elucidate the structural basis of PP2A/B55α inhibition by the IER5 protein.
- To investigate the functional consequences of IER5-PP2A/B55α interaction on cellular processes.
- To identify potential therapeutic strategies for modulating PP2A/B55α activity.
Main Methods:
- Cryoelectron microscopy (cryo-EM) to determine the structure of the PP2A/B55α-IER5 complex.
- Biochemical assays to assess PP2A/B55α phosphatase activity.
- Site-directed mutagenesis and co-immunoprecipitation to study protein-protein interactions.
- Cellular assays to evaluate the impact on gene expression (e.g., KRT1).
Main Results:
- The cryo-EM structure reveals that the N-terminal region of IER5 (IER5-N50) directly binds to B55α, occluding a key substrate-binding surface.
- IER5-N50 inhibits PP2A/B55α-mediated dephosphorylation of pTau in vitro.
- Mutations disrupting the IER5-PP2A/B55α interface impair complex formation and suppress IER5-dependent regulation of KRT1 expression.
- Structural homologs of IER5, such as SERTA domain proteins, were identified as potential PP2A/B55α binders.
Conclusions:
- IER5 inhibits PP2A/B55α by physically blocking substrate access.
- The IER5-PP2A/B55α interaction is critical for regulating specific cellular functions, including gene expression.
- These findings provide a molecular framework for understanding PP2A/B55α regulation and offer a basis for developing targeted therapeutics.
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