Related Experiment Video
Updated: Jul 16, 2025

Modeling the Functional Network for Spatial Navigation in the Human Brain
Published on: October 13, 2023
Coarse-Grained Modeling Using Neural Networks Trained on Structural Data.
Mikhail Ivanov1, Maksim Posysoev1, Alexander P Lyubartsev1
1Department of Materials and Environmental Chemistry, Stockholm University, SE-106 91 Stockholm, Sweden.
We developed a novel bottom-up coarse-graining method using artificial neural networks trained on atomistic simulations. This approach creates transferable coarse-grained potentials for complex solutions, improving simulation efficiency and accuracy.
Area of Science:
- Computational Chemistry
- Materials Science
- Statistical Mechanics
Background:
- Coarse-graining simplifies complex molecular systems for large-scale simulations.
- Developing accurate coarse-grained potentials from atomistic data remains a challenge.
- Existing methods often lack transferability across different conditions.
Purpose of the Study:
- To introduce a novel bottom-up coarse-graining method.
- To train artificial neural networks (ANNs) on atomistic simulation data for coarse-grained interactions.
- To demonstrate the transferability of ANN-derived potentials.
Main Methods:
- Utilized a bottom-up coarse-graining approach.
- Employed ANNs trained on radial distribution functions from atomistic simulations.
- Applied the inverse Monte Carlo method to link ANN weights to structural properties.
- Tested on Lennard-Jones systems and methanol-water solutions.
Main Results:
- Successfully modeled a Lennard-Jones system with a linear ANN.
- Developed a nonlinear ANN for methanol-water solutions using atomistic data.
- Demonstrated that the ANN potential is transferable across various methanol concentrations.
- Showcased transferability even for concentrations not present in the training data.
Conclusions:
- The proposed ANN-based coarse-graining method effectively generates transferable potentials.
- This approach enhances the accuracy and applicability of coarse-grained models.
- ANNs provide a powerful tool for deriving accurate inter-site potentials in coarse-grained simulations.
More Related Videos
10:45Anatomically Inspired Three-dimensional Micro-tissue Engineered Neural Networks for Nervous System Reconstruction, Modulation, and Modeling
Published on: May 31, 2017
08:51Statistical Modelling of Cortical Connectivity Using Non-invasive Electroencephalograms
Published on: November 1, 2019
Related Concept Videos
Structural Classification of Joints
A fibrous joint is where the adjacent bones are united by fibrous connective...
Neuron Structure
Structure and Function of Neurons
The neuronal cell body—the soma— houses the nucleus and organelles vital to...
Neural Circuits
Neuronal pools are collections of nerve cells with similar functions and interact through chemical and electrical signals. These pools include both interneurons (the central neural circuit nodes that...
Modeling and Similitude
Shape and Texture of Coarse Aggregate