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Updated: Aug 9, 2026

Focus Formation: A Cell-based Assay to Determine the Oncogenic Potential of a Gene
Published on: December 31, 2014
Interaction of the oncogene protein myc with specific DNA fragments
Abstract:
The p110gag-myc protein coded for by the retrovirus MC29 was purified 3,000-fold from MC29-Q8 transformed cells by immuno-affinity chromatography using IgG specific for the N-terminal region of the gag protein. Interaction of the protein with DNA fragments was studied by filter binding assay. DNA fragments were obtained from a MC29 DNA clone by restriction endonuclease treatment. Besides the complete DNA provirus the clone contained flanking cellular sequences into which the provirus had integrated. The DNA fragments which were retained by the p110gag-myc protein were eluted from the filter and analyzed by agarose gel electrophoresis. Preferential binding of a DNA fragment originating from the flanking cellular sequences was detected. The protein did not preferentially bind to the viral LTR promoter/enhancer region as suggested by an autoregulatory model, which can therefore no longer be substantiated.
Insights
The p110gag-myc protein binds preferentially to cellular DNA flanking the MC29 retrovirus integration site. This finding refutes the autoregulatory model of viral gene expression.
Area of Science:
- Molecular Biology
- Retroviral Research
- Protein-DNA Interactions
Background:
- The MC29 retrovirus encodes the p110gag-myc protein, a potential regulator of viral gene expression.
- Previous hypotheses suggested an autoregulatory model where the protein binds to the viral LTR promoter/enhancer region.
Purpose of the Study:
- To investigate the DNA-binding properties of the purified p110gag-myc protein.
- To determine if the protein interacts with viral or cellular DNA sequences.
Main Methods:
- Purification of p110gag-myc protein using immuno-affinity chromatography.
- Filter binding assays to study protein-DNA interactions with fragments from a MC29 DNA clone.
- Agarose gel electrophoresis to analyze DNA fragments retained by the protein.
Main Results:
- The p110gag-myc protein was purified 3,000-fold.
- Preferential binding of the protein to a DNA fragment from flanking cellular sequences was observed.
- No preferential binding to the viral LTR promoter/enhancer region was detected.
Conclusions:
- The p110gag-myc protein interacts with flanking cellular DNA, not the viral LTR.
- The autoregulatory model for MC29 retrovirus gene expression is not substantiated by these findings.
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