Antibiotic-induced gut dysbiosis and cognitive, emotional, and behavioral changes in rodents: a systematic review and meta-analysis
Related Experiment Video
Updated: Jul 16, 2025

Quantitative Polymerase Chain Reaction-based Analyses of Murine Intestinal Microbiota After Oral Antibiotic Treatment
Published on: November 17, 2018
Shivdeep S Hayer1,2,3,4, Soonjo Hwang5, Jonathan B Clayton1,2,3,6,7,8
1Department of Biology, University of Nebraska at Omaha, Omaha, NE, United States.
Abstract:
There are previous epidemiological studies reporting associations between antibiotic use and psychiatric symptoms. Antibiotic-induced gut dysbiosis and alteration of microbiota-gut-brain axis communication has been proposed to play a role in this association. In this systematic review and meta-analysis, we reviewed published articles that have presented results on changes in cognition, emotion, and behavior in rodents (rats and mice) after antibiotic-induced gut dysbiosis. We searched three databases-PubMed, Web of Science, and SCOPUS to identify such articles using dedicated search strings and extracted data from 48 articles. Increase in anxiety and depression-like behavior was reported in 32.7 and 40.7 percent of the study-populations, respectively. Decrease in sociability, social novelty preference, recognition memory and spatial cognition was found in 18.1, 35.3, 26.1, and 62.5 percent of the study-populations, respectively. Only one bacterial taxon (increase in gut Proteobacteria) showed statistically significant association with behavioral changes (increase in anxiety). There were no consistent findings with statistical significance for the potential biomarkers [Brain-derived neurotrophic factor (BDNF) expression in the hippocampus, serum corticosterone and circulating IL-6 and IL-1β levels]. Results of the meta-analysis revealed a significant association between symptoms of negative valence system (including anxiety and depression) and cognitive system (decreased spatial cognition) with antibiotic intake (p < 0.05). However, between-study heterogeneity and publication bias were statistically significant (p < 0.05). Risk of bias was evaluated to be high in the majority of the studies. We identified and discussed several reasons that could contribute to the heterogeneity between the results of the studies examined. The results of the meta-analysis provide promising evidence that there is indeed an association between antibiotic-induced gut dysbiosis and psychopathologies. However, inconsistencies in the implemented methodologies make generalizing these results difficult. Gut microbiota depletion using antibiotics may be a useful strategy to evaluate if and how gut microbes influence cognition, emotion, and behavior, but the heterogeneity in methodologies used precludes any definitive interpretations for a translational impact on clinical practice.
Insights
Antibiotic use can alter gut bacteria, potentially impacting brain function and behavior. This review found evidence linking antibiotic-induced gut dysbiosis to anxiety, depression, and cognitive changes in rodents.
Area of Science:
- Neuroscience
- Microbiology
- Psychiatry
Background:
- Epidemiological studies suggest a link between antibiotic consumption and psychiatric symptoms.
- The mechanism may involve antibiotic-induced gut dysbiosis and altered communication along the microbiota-gut-brain axis.
Purpose of the Study:
- To systematically review and meta-analyze studies on rodent behavior and cognition following antibiotic-induced gut dysbiosis.
- To assess the association between antibiotic use, gut microbiota alterations, and changes in emotion, cognition, and behavior.
Main Methods:
- Systematic review and meta-analysis of 48 articles.
- Searched PubMed, Web of Science, and SCOPUS databases for relevant studies.
- Extracted data on behavioral and cognitive changes, and potential biomarkers.
Main Results:
- Increased anxiety (32.7%) and depression-like behavior (40.7%) were frequently reported.
- Decreased sociability (18.1%), social novelty preference (35.3%), recognition memory (26.1%), and spatial cognition (62.5%) were observed.
- A significant association was found between antibiotic intake and negative valence/cognitive symptoms, but high heterogeneity and bias were noted.
Conclusions:
- Antibiotic-induced gut dysbiosis is associated with psychopathologies and cognitive deficits in rodents.
- Methodological inconsistencies limit definitive interpretations and clinical translation.
- Further research with standardized methodologies is needed to clarify the role of gut microbes in behavior and mental health.

