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Updated: Jul 15, 2025

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Probing the Brain in Autism Using fMRI and Diffusion Tensor Imaging
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Explaining Deep Learning-Based Representations of Resting State Functional Connectivity Data: Focusing on
Biorxiv : the Preprint Server for Biology
|September 25, 2023
Summary
This study introduces explainable variational autoencoders (VAEs) to interpret resting state functional connectivity (rsFC) patterns in autism spectrum disorder (ASD). Latent contribution scores reveal differences in brain networks between individuals with ASD and controls.
Area of Science:
- Neuroscience
- Machine Learning
- Psychiatric Disorders
Background:
- Resting state functional Magnetic Resonance Imaging (rs-fMRI) provides insights into brain organization in psychiatric disorders.
- High dimensionality of rs-fMRI data necessitates dimensionality reduction for machine learning.
- Variational Autoencoders (VAEs) extract low-dimensional latent representations from rs-fMRI, but interpretation remains challenging.
Conclusions:
- Introduced latent contribution scores to interpret nonlinear patterns identified by VAEs.
- Scores capture changes in rsFC features relative to latent representations.
- Enables explainable deep learning for understanding ASD neural mechanisms.
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