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A Data Integration Workflow to Identify Drug Combinations Targeting Synthetic Lethal Interactions
Published on: May 27, 2021
DNA2 Nuclease Inhibition Confers Synthetic Lethality in Cancers with Mutant p53 and Synergizes with PARP Inhibitors
Helena Folly-Kossi1, Joshua D Graves1,2, Lidija A Wilhelms Garan1,2
1Section of Hematology/Oncology, Department of Medicine, Baylor College of Medicine, Houston, Texas.
Abstract:
The tumor suppressor p53 promotes tumor-suppressive activities including cell-cycle inhibition, apoptosis, senescence, autophagy, and DNA repair. However, somatic mutations in the TP53 gene are one of the most common alterations in human cancers. We previously showed that mutant p53 (mutp53) can bind TopBP1, an ATR activator, to attenuate its ATR-activating function. A partially defective ATR function caused by mutp53 makes cancer cells more vulnerable to inhibitors of other TopBP1-independent ATR activators, such as DNA2. DNA2 plays a role in homologous recombination (HR) repair by resecting DNA ends in double-strand breaks and preparing them for invasion of homologous duplex. Here we identify a new DNA2 inhibitor, namely d16, and show that d16 exhibits anticancer activities and overcomes chemotherapy resistance in mutp53-bearing cancers. Similar to DNA2 depletion, d16 treatment results in cell-cycle arrest mainly at S-phase. Moreover, reexpression of mutp53 in a p53-null cancer cell line makes cells more vulnerable to d16-mediated inhibition of ATR activity. As d16 also inhibits HR, a combination of d16 and PARP inhibitors displays synergistic induction of cell death. DNA2 is often overexpressed in cancer, particularly in cancer cells harboring mutp53. Overexpression of DNA2 is associated with poor outcome in ovarian cancer. Overall, our results provide a rationale to target DNA2 as a new synthetic lethality approach in mutp53-bearing cancers, and further extend the benefit of PARP inhibitors beyond BRCA-mutated cancers.
Significance:
This study identifies a new DNA2 inhibitor as a synthetic lethal targeted therapy for mutp53-harboring cancers, and provides a new therapeutic strategy by combining DNA2 inhibitors with PARP inhibitors for these cancers.
Insights
Researchers identified a new DNA2 inhibitor, d16, demonstrating anticancer activity and overcoming resistance in mutant p53 cancers. This inhibitor, combined with PARP inhibitors, offers a novel synthetic lethality strategy for treating these challenging malignancies.
Area of Science:
- Oncology
- Molecular Biology
- Cancer Therapeutics
Background:
- Mutant p53 (mutp53) is common in human cancers and can impair DNA damage response pathways.
- Mutp53 interferes with ATR activation by TopBP1, creating vulnerabilities in cancer cells.
- DNA2 is crucial for DNA repair, particularly homologous recombination (HR), and is often overexpressed in cancers with mutp53.
Purpose of the Study:
- To identify and evaluate novel therapeutic strategies targeting cancers with mutant p53.
- To investigate the potential of DNA2 inhibition as a synthetic lethality approach in mutp53-bearing cancers.
- To explore the combination of DNA2 inhibitors with PARP inhibitors for enhanced anti-cancer effects.
Main Methods:
- Identification and characterization of a novel DNA2 inhibitor, d16.
- Assessment of d16's anticancer activities and its effect on cell-cycle progression and DNA repair.
- Evaluation of d16's efficacy in overcoming chemotherapy resistance in mutp53 cancer models.
- Combination studies with PARP inhibitors to assess synergistic effects.
Main Results:
- The novel inhibitor d16 exhibits significant anticancer activities and overcomes chemotherapy resistance in mutp53-bearing cancers.
- d16 treatment leads to cell-cycle arrest, primarily in S-phase, and inhibits DNA repair pathways including HR.
- Re-expression of mutp53 sensitizes cancer cells to d16-mediated ATR inhibition.
- Combination therapy with d16 and PARP inhibitors shows synergistic induction of cancer cell death.
Conclusions:
- Targeting DNA2 represents a promising synthetic lethality strategy for cancers harboring mutant p53.
- The novel DNA2 inhibitor d16 demonstrates potential as a targeted therapy for mutp53 cancers.
- Combining DNA2 inhibitors with PARP inhibitors offers a novel therapeutic approach, extending PARP inhibitor benefits beyond BRCA-mutated cancers.
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