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Updated: Jun 17, 2026

In Vivo Chronic Two-Photon Imaging of Microglia in the Mouse Hippocampus
Published on: July 6, 2022
Phenomic Microglia Diversity as a Druggable Target in the Hippocampus in Neurodegenerative Diseases
Daniele Lana1, Giada Magni2, Elisa Landucci1
1Department of Health Sciences, Section of Clinical Pharmacology and Oncology, University of Florence, Viale Pieraccini 6, 50139 Florence, Italy.
Abstract:
Phenomics, the complexity of microglia phenotypes and their related functions compels the continuous study of microglia in disease animal models to find druggable targets for neurodegenerative disorders. Activation of microglia was long considered detrimental for neuron survival, but more recently it has become apparent that the real scenario of microglia morphofunctional diversity is far more complex. In this review, we discuss the recent literature on the alterations in microglia phenomics in the hippocampus of animal models of normal brain aging, acute neuroinflammation, ischemia, and neurodegenerative disorders, such as AD. Microglia undergo phenomic changes consisting of transcriptional, functional, and morphological changes that transform them into cells with different properties and functions. The classical subdivision of microglia into M1 and M2, two different, all-or-nothing states is too simplistic, and does not correspond to the variety of phenotypes recently discovered in the brain. We will discuss the phenomic modifications of microglia focusing not only on the differences in microglia reactivity in the diverse models of neurodegenerative disorders, but also among different areas of the brain. For instance, in contiguous and highly interconnected regions of the rat hippocampus, microglia show a differential, finely regulated, and region-specific reactivity, demonstrating that microglia responses are not uniform, but vary significantly from area to area in response to insults. It is of great interest to verify whether the differences in microglia reactivity may explain the differential susceptibility of different brain areas to insults, and particularly the higher sensitivity of CA1 pyramidal neurons to inflammatory stimuli. Understanding the spatiotemporal heterogeneity of microglia phenomics in health and disease is of paramount importance to find new druggable targets for the development of novel microglia-targeted therapies in different CNS disorders. This will allow interventions in three different ways: (i) by suppressing the pro-inflammatory properties of microglia to limit the deleterious effect of their activation; (ii) by modulating microglia phenotypic change to favor anti-inflammatory properties; (iii) by influencing microglia priming early in the disease process.
Insights
Microglia exhibit complex phenomic changes in the brain during aging and neurodegenerative diseases. Understanding this diversity is key to developing targeted therapies for neurological disorders.
Area of Science:
- Neuroscience
- Immunology
- Cell Biology
Background:
- Microglia, the brain's immune cells, display complex phenotypes crucial for neurological health.
- Historically viewed as solely detrimental, microglia's role in neurodegeneration is now understood as highly diverse and context-dependent.
- Traditional M1/M2 classifications oversimplify microglia's multifaceted nature.
Purpose of the Study:
- To review recent literature on microglia phenomics in various neurological conditions.
- To highlight the spatiotemporal heterogeneity of microglia responses in the brain.
- To identify potential druggable targets for neurodegenerative disorders based on microglia phenotype.
Main Methods:
- Review of existing scientific literature on microglia phenomics.
- Analysis of data from animal models of normal brain aging, acute neuroinflammation, ischemia, and neurodegenerative diseases (e.g., Alzheimer's disease).
- Focus on transcriptional, functional, and morphological changes in microglia.
Main Results:
- Microglia undergo significant phenomic alterations in response to aging and disease.
- Microglia reactivity is region-specific within the brain, even in contiguous areas like the hippocampus.
- These region-specific responses may explain differential susceptibility of brain areas to insults.
Conclusions:
- The simplistic M1/M2 paradigm is inadequate for describing microglia diversity.
- Understanding the spatiotemporal heterogeneity of microglia is essential for developing effective therapies.
- Therapeutic strategies can target microglia to suppress inflammation, promote anti-inflammatory functions, or modulate early disease priming.
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