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Updated: Jul 15, 2025

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Published on: August 5, 2020
CCPlotR: an R package for the visualization of cell-cell interactions
Sarah Ennis1,2,3, Pilib Ó Broin1,2, Eva Szegezdi1,3
1The SFI Centre for Research Training in Genomics Data Science, Galway, H91 TK33, Ireland.
Summary:
We present CCPlotR-an R package that generates visualizations of cell-cell interactions. CCPlotR is designed to work with the output of tools that predict cell-cell interactions from single-cell gene expression data and requires only a table of predicted interactions as input. The package can generate a comprehensive set of publication-ready figures such as heatmaps, dotplots, circos plots and network diagrams, providing a useful resource for researchers working on cell-cell interactions.
Availability And Implementation:
CCPlotR is available to download and install from GitHub (https://github.com/Sarah145/CCPlotR) and comes with a toy dataset to demonstrate the different functions. Support for users will be provided via the GitHub issues tracker (https://github.com/Sarah145/CCPlotR/issues).
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