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Published on: August 23, 2024
Telomeric DNA breaks in human induced pluripotent stem cells trigger ATR-mediated arrest and telomerase-independent
Katrina N Estep1,2, John W Tobias3, Rafael J Fernandez1
1Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Abstract:
Although mechanisms of telomere protection are well-defined in differentiated cells, how stem cells sense and respond to telomere dysfunction, in particular telomeric double-strand breaks (DSBs), is poorly characterized. Here, we report the DNA damage signaling, cell cycle, and transcriptome changes in human induced pluripotent stem cells (iPSCs) in response to telomere-internal DSBs. We engineer human iPSCs with an inducible TRF1-FokI fusion protein to acutely induce DSBs at telomeres. Using this model, we demonstrate that TRF1-FokI DSBs activate an ATR-dependent DNA damage response, which leads to p53-independent cell cycle arrest in G2. Using CRISPR-Cas9 to cripple the catalytic domain of telomerase reverse transcriptase, we show that telomerase is largely dispensable for survival and lengthening of TRF1-FokI-cleaved telomeres, which instead are effectively repaired by robust homologous recombination (HR). In contrast to HR-based telomere maintenance in mouse embryonic stem cells, where HR causes ZSCAN4-dependent extension of telomeres beyond their initial lengths, HR-based repair of telomeric breaks is sufficient to maintain iPSC telomeres at a normal length, which is compatible with sustained survival of the cells over several days of TRF1-FokI induction. Our findings suggest a previously unappreciated role for HR in telomere maintenance in telomerase-positive iPSCs and reveal distinct iPSC-specific responses to targeted telomeric DNA damage.
Insights
Human stem cells use homologous recombination (HR) to repair telomere DNA breaks, independent of telomerase. This process maintains telomere length and cell survival, revealing a distinct stem cell response to DNA damage.
Area of Science:
- Stem cell biology
- DNA repair mechanisms
- Telomere biology
Background:
- Mechanisms of telomere protection are understood in differentiated cells, but poorly characterized in stem cells.
- How stem cells sense and respond to telomere dysfunction, specifically telomeric double-strand breaks (DSBs), remains unclear.
Purpose of the Study:
- To investigate DNA damage signaling, cell cycle, and transcriptome changes in human induced pluripotent stem cells (iPSCs) after inducing telomere-internal DSBs.
- To elucidate the roles of telomerase and homologous recombination (HR) in iPSC response to telomeric DSBs.
Main Methods:
- Engineered human iPSCs with an inducible TRF1-FokI fusion protein to create acute DSBs at telomeres.
- Utilized CRISPR-Cas9 to inactivate telomerase reverse transcriptase.
- Analyzed DNA damage response, cell cycle arrest, and telomere repair pathways.
Main Results:
- Induced telomeric DSBs activated an ATR-dependent DNA damage response, causing p53-independent G2 cell cycle arrest.
- Telomerase was dispensable for survival and repair of TRF1-FokI-induced telomeric breaks.
- Homologous recombination (HR) effectively repaired telomeric DSBs, maintaining normal telomere length and cell survival.
- Unlike mouse embryonic stem cells, HR in iPSCs maintained telomere length without extension.
Conclusions:
- Homologous recombination plays a significant role in telomere maintenance in telomerase-positive iPSCs.
- iPSCs exhibit unique responses to targeted telomeric DNA damage compared to other stem cells.
- The findings highlight a novel mechanism for telomere maintenance in human pluripotent stem cells.
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