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Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
Pathogenicity and Function Analysis of Two Novel SLC4A11 Variants in Patients With Congenital Hereditary Endothelial
Tianjiao Zhen1, Ya Li2, Qingge Guo2
1Henan University People's Hospital, Henan Provincial People's Hospital, Zhengzhou, China.
Insights
This study identified two novel SLC4A11 variants in a congenital hereditary endothelial dystrophy (CHED) family. The K263R variant caused mitochondrial dysfunction, but an antioxidant, SkQ1, showed protective effects, suggesting a potential new therapy for CHED.
Area of Science:
- Genetics
- Ophthalmology
- Cell Biology
Background:
- Congenital hereditary endothelial dystrophy (CHED) is an inherited eye condition.
- The SLC4A11 gene plays a crucial role in corneal endothelial function.
- Novel variants in SLC4A11 can lead to CHED, but their exact mechanisms are not fully understood.
Purpose of the Study:
- To investigate the pathogenicity and function of two new SLC4A11 variants in CHED.
- To analyze the in vitro function of the SLC4A11 (K263R) mutant.
- To explore potential therapeutic interventions for CHED.
Main Methods:
- Ophthalmic examination of a CHED patient.
- Whole-exome and Sanger sequencing for mutation identification.
- In vitro studies using HEK293T cells transfected with wild-type and mutant SLC4A11, treated with SkQ1.
- Measurement of cellular respiration, reactive oxygen species (ROS), mitochondrial membrane potential, and apoptosis.
Main Results:
- Two novel heterozygous SLC4A11 variants were identified in the CHED family.
- The c.1464-1G>T variant was confirmed as pathogenic.
- The c.788A>G (p.Lys263Arg) variant led to increased ROS and apoptosis, decreased mitochondrial membrane potential and oxygen consumption in vitro.
- SkQ1 treatment mitigated these negative effects.
Conclusions:
- Two novel pathogenic SLC4A11 variants were identified in a CHED family.
- The SLC4A11 (K263R) variant induces mitochondrial dysfunction and apoptosis.
- The antioxidant SkQ1 demonstrates a protective effect, indicating its potential as a novel therapeutic agent for CHED.
Purpose:
The purpose of this study was to explore the pathogenicity and function of two novel SLC4A11 variants associated with congenital hereditary endothelial dystrophy (CHED) and to study the function of a SLC4A11 (K263R) mutant in vitro.
Methods:
Ophthalmic examinations were performed on a 28-year-old male proband with CHED. Whole-exome and Sanger sequencing were applied for mutation screening. Bioinformatics and pathogenicity analysis were performed. HEK293T cells were transfected with the plasmids of empty vector, wild-type SLC4A11, and SLC4A11 (K263R) mutant. The transfected cells were treated with SkQ1. Oxygen consumption, cellular reactive oxygen species (ROS) level, mitochondrial membrane potential, and apoptosis rate were measured.
Results:
The proband had poor visual acuity with nystagmus since childhood. Corneal foggy opacity was evident in both eyes. Two novel SLC4A11 variants were detected. Sanger sequencing showed that the proband's father and sister carried c.1464-1G>T variant, and the proband's mother and sister carried c.788A>G (p.Lys263Arg) variant. Based on the American College of Medical Genetics (ACMG) guidelines, SLC4A11 c.1464-1G>T was pathogenic, whereas c.788A>G, p.K263R was a variant of undetermined significance. In vitro, SLC4A11 (K263R) variant increased ROS level and apoptosis rate. Decrease in mitochondrial membrane potential and oxygen consumption rate were remarkable. Furthermore, SkQ1 decreased ROS levels and apoptosis rate but increased mitochondrial membrane potential in the transfected cells.
Conclusions:
Two novel heterozygous pathogenic variants of the SLC4A11 gene were identified in a family with CHED. The missense variant SLC4A11 (K263R) caused mitochondrial dysfunction and increased apoptosis in mutant transfected cells. In addition, SkQ1 presented a protective effect suggesting the anti-oxidant might be a novel therapeutic drug.
Translational Relevance:
This study verified the pathogenicity of 2 novel variants in the SLC4A11 gene in a CHED family and found an anti-oxidant might be a new drug.
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