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Updated: Jul 15, 2025

Analysis of Combinatorial miRNA Treatments to Regulate Cell Cycle and Angiogenesis
Published on: March 30, 2019
Targeting oncogenic microRNAs from the miR-371~373 and miR-302/367 clusters in malignant germ cell tumours causes
Shivani Bailey1,2, Marta Ferraresso1, Luz Alonso-Crisostomo1
1Department of Pathology, University of Cambridge, Cambridge, CB2 1QP, UK.
Background:
MiR-371~373 and miR-302/367 cluster over-expression occurs in all malignant germ cell tumours (GCTs), regardless of age (paediatric/adult), site (gonadal/extragonadal), or subtype [seminoma, yolk sac tumour (YST), embryonal carcinoma (EC)]. Six of eight microRNAs from these clusters contain the seed sequence 'AAGUGC', determining mRNA targeting. Here we sought to identify the significance of these observations by targeting these microRNAs functionally.
Methods:
We targeted miR-371~373 and/or miR-302/367 clusters in malignant GCT cell lines, using CRISPR-Cas9, gapmer primary miR-302/367 transcript inhibition, and peptide nucleic acid (PNA) or locked nucleic acid (LNA)-DNA inhibition targeting miR-302a-d-3p, and undertook relevant functional assays.
Results:
MiR-302/367 cluster microRNAs made the largest contribution to AAGUGC seed abundance in malignant GCT cells, regardless of subtype (seminoma/YST/EC). Following the unsuccessful use of CRISPR-Cas9, gapmer, and PNA systems, LNA-DNA-based targeting resulted in growth inhibition in seminoma and YST cells. This was associated with the de-repression of multiple mRNAs targeted by AAGUGC seed-containing microRNAs, with pathway analysis confirming predominant disruption of Rho-GTPase signalling, vesicle organisation/transport, and cell cycle regulation, findings corroborated in clinical samples. Further LNA-DNA inhibitor studies confirmed direct cell cycle effects, with an increase of cells in G0/G1-phase and a decrease in S-phase.
Conclusion:
Targeting of specific miR-371~373 and miR-302/367 microRNAs in malignant GCTs demonstrated their functional significance, with growth inhibition mediated through cell cycle disruption.
Insights
Over-expressed microRNAs (miR-371~373 and miR-302/367) are key drivers in malignant germ cell tumours (GCTs). Targeting these microRNAs with LNA-DNA inhibitors effectively inhibited GCT cell growth by disrupting cell cycle regulation.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Germ cell tumours (GCTs) consistently over-express miR-371~373 and miR-302/367 clusters across all subtypes and patient demographics.
- These microRNA clusters share a common 'AAGUGC' seed sequence critical for mRNA targeting.
Purpose of the Study:
- To investigate the functional significance of miR-371~373 and miR-302/367 clusters in malignant GCTs.
- To identify effective therapeutic strategies by targeting these microRNAs.
Main Methods:
- Utilized CRISPR-Cas9, gapmer, PNA, and LNA-DNA inhibition techniques to target miR-371~373 and miR-302/367 clusters in GCT cell lines.
- Performed functional assays to assess the impact of microRNA targeting on cell growth and molecular pathways.
Main Results:
- LNA-DNA based inhibition of miR-302/367 cluster microRNAs led to significant growth inhibition in seminoma and YST cells.
- Targeting resulted in de-repression of mRNAs regulated by the 'AAGUGC' seed sequence, impacting Rho-GTPase signaling, vesicle transport, and cell cycle.
- Confirmed direct cell cycle effects, including G0/G1 phase arrest and S-phase reduction.
Conclusions:
- Specific targeting of miR-371~373 and miR-302/367 microRNAs is functionally significant in malignant GCTs.
- Growth inhibition in GCTs is mediated through the disruption of cell cycle regulation by these microRNAs.
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