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Updated: Jul 15, 2025

Automated Segmentation of Cortical Grey Matter from T1-Weighted MRI Images
Published on: January 7, 2019
Rules-based Volumetric Segmentation of Multiparametric MRI for Response Assessment in Recurrent High-Grade Glioma
Harshan Ravi1, Samuel H Hawkins1, Olya Stringfield1
1Moffitt Cancer Center.
Abstract:
We report domain knowledge-based rules for assigning voxels in brain multiparametric MRI (mpMRI) to distinct tissuetypes based on their appearance on Apparent Diffusion Coefficient of water (ADC) maps, T1-weighted unenhanced and contrast-enhanced, T2-weighted, and Fluid-Attenuated Inversion Recovery images. The development dataset comprised mpMRI of 18 participants with preoperative high-grade glioma (HGG), recurrent HGG (rHGG), and brain metastases. External validation was performed on mpMRI of 235 HGG participants in the BraTS 2020 training dataset. The treatment dataset comprised serial mpMRI of 32 participants (total 231 scan dates) in a clinical trial of immunoradiotherapy in rHGG (NCT02313272). Pixel intensity-based rules for segmenting contrast-enhancing tumor (CE), hemorrhage, Fluid, non-enhancing tumor (Edema1), and leukoaraiosis (Edema2) were identified on calibrated, co-registered mpMRI images in the development dataset. On validation, rule-based CE and High FLAIR (Edema1 + Edema2) volumes were significantly correlated with ground truth volumes of enhancing tumor (R = 0.85;p < 0.001) and peritumoral edema (R = 0.87;p < 0.001), respectively. In the treatment dataset, a model combining time-on-treatment and rule-based volumes of CE and intratumoral Fluid was 82.5% accurate for predicting progression within 30 days of the scan date. An explainable decision tree applied to brain mpMRI yields validated, consistent, intratumoral tissuetype volumes suitable for quantitative response assessment in clinical trials of rHGG.
Insights
Domain knowledge-based rules accurately segment brain tumor tissues in multiparametric MRI (mpMRI). This method enables quantitative assessment for clinical trials, predicting progression in recurrent high-grade glioma (rHGG).
Area of Science:
- Radiology and Medical Imaging
- Oncology
- Artificial Intelligence in Medicine
Background:
- Accurate segmentation of brain tumor subregions in multiparametric MRI (mpMRI) is crucial for treatment response assessment.
- Current segmentation methods may lack consistency and interpretability, particularly in complex cases like high-grade glioma (HGG) and recurrent HGG (rHGG).
- Quantitative analysis of tumor components is essential for evaluating treatment efficacy in clinical trials.
Approach:
- Developed domain knowledge-based rules to assign voxels to distinct tissue types (e.g., contrast-enhancing tumor, edema) using mpMRI data.
- Validated segmentation rules on external datasets and assessed their correlation with ground truth tumor and edema volumes.
- Integrated rule-based tissue volumes into a predictive model for disease progression in a clinical trial of recurrent high-grade glioma (rHGG).
Key Points:
- Rule-based segmentation of contrast-enhancing tumor (CE) and peritumoral edema (High FLAIR) showed strong correlation with ground truth volumes (R=0.85 and R=0.87, respectively).
- A model combining treatment time and rule-based volumes achieved 82.5% accuracy in predicting progression within 30 days for rHGG patients.
- The explainable decision tree approach provides validated and consistent intratumoral tissue volumes.
Conclusions:
- Domain knowledge-based rules provide a validated and consistent method for segmenting brain tumor tissues on mpMRI.
- This approach enables reliable quantitative assessment of tumor components, crucial for monitoring treatment response.
- The developed method shows promise for predicting clinical progression in rHGG patients within clinical trial settings.
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