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Related Concept Videos

Flow Cytometry01:23

Flow Cytometry

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The development of flow cytometry techniques began in 1934 with initial attempts by Andrew Moldavan, a bacteriologist who counted the cells in a flowing capillary system. Moldavan pumped cells through a capillary tube focused under a microscope for visualization. The invention of photometry allowed the measurement of differentially-stained cells, and Louis Kamentsky developed the first multiparameter flow cytometer in 1965 to identify and count the cancer cells in cervical tissue specimens.
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ExCYT: A Graphical User Interface for Streamlining Analysis of High-Dimensional Cytometry Data
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Shared resource lab (SRL) strategies for supporting high-dimensional cytometry data analysis.

David M Gravano1, Aja M Rieger2, Lauren Nettenstrom3

  • 1Stem Cell Instrumentation Foundry, University of California Merced, Merced, California, USA.

Cytometry. Part a : the Journal of the International Society for Analytical Cytology
|October 6, 2023
PubMed
Summary
This summary is machine-generated.

Cytometry Shared Resource Laboratories (SRLs) play a key role in supporting high-dimensional data analysis. This study explores current strategies, limitations, and challenges faced by SRLs and their users in handling complex cytometry datasets.

Keywords:
educationflow cytometryhigh-dimensional data analysisshared resource lab

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Area of Science:

  • Single-cell biology
  • Biotechnology
  • Data science

Background:

  • Increasingly complex single-cell data from flow and mass cytometry necessitates advanced analytical approaches.
  • Cytometry Shared Resource Laboratories (SRLs) are crucial for data acquisition but their role in downstream data analysis is less defined.

Purpose of the Study:

  • To investigate current strategies employed by SRLs for high-dimensional data analysis support.
  • To identify limitations and long-term challenges in SRL-provided data analysis support.
  • To offer recommendations for enhancing SRLs' role in high-dimensional data analysis.

Main Methods:

  • Conducted two surveys to gather insights from SRLs and users.
  • Organized a workshop at CYTO 2022 to discuss findings and strategies.
  • Analyzed responses to identify successful support mechanisms and areas for improvement.

Main Results:

  • SRLs are actively involved in supporting high-dimensional data analysis, but user needs and SRL capabilities often misalign.
  • Key challenges include resource limitations, training gaps, and the evolving nature of cytometry data.
  • Successful strategies involve dedicated data analysis personnel and standardized workflows.

Conclusions:

  • SRLs are pivotal in facilitating high-dimensional data analysis, requiring strategic development of downstream support.
  • Addressing identified limitations and challenges is essential for maximizing the impact of single-cell technologies.
  • Clearer guidelines and resource allocation are needed to empower SRLs in advanced data analysis.