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Bioinformatics analysis of potential common pathogenic mechanisms for systemic lupus erythematosus and acute
Yang Gao1, Yunxia Wang2, Muwei Li1
1Department of Cardiology, Zhengzhou University People's Hospital, Henan Provincial People's Hospital, Fuwai Central China Cardiovascular Hospital, Zhengzhou, Henan, China.
Insights
Systemic lupus erythematosus (SLE) and acute myocardial infarction (AMI) share common molecular pathways. Identifying shared genes and pathways offers new insights into preventing and treating AMI in SLE patients.
Area of Science:
- Molecular biology
- Immunology
- Cardiology
Background:
- Patients with systemic lupus erythematosus (SLE) face an elevated risk of acute myocardial infarction (AMI).
- The shared molecular mechanisms underlying this increased risk remain largely unelucidated.
- This research investigates the common molecular underpinnings connecting SLE and AMI.
Purpose of the Study:
- To identify common molecular mechanisms between SLE and AMI.
- To uncover potential therapeutic targets for AMI in SLE patients.
- To provide a foundation for future research into the pathogenesis of this complication.
Main Methods:
- Comparative analysis of gene expression profiles from SLE (GSE50772) and AMI (GSE66360) datasets.
- Identification of common differentially expressed genes (DEGs) between the two conditions.
- Construction and analysis of protein-protein interaction (PPI) networks, regulatory networks, and identification of hub genes.
Main Results:
- 70 common DEGs (7 downregulated, 63 upregulated) were identified between SLE and AMI.
- Enrichment analysis revealed involvement in IL-17 signaling, TNF signaling, lipid metabolism, and atherosclerosis pathways.
- 12 significant hub genes, including IL1B, TNF, and FOS, were identified as key players.
Conclusions:
- This study elucidates shared pathogenic pathways between SLE and AMI.
- The identified hub genes and pathways offer novel perspectives for understanding and treating AMI in SLE patients.
- Findings may guide clinical strategies for the prevention and management of cardiovascular complications in SLE.
Background:
Systemic lupus erythematosus (SLE) patients have a higher risk of acute myocardial infarction (AMI) compared to the general population. However, the underlying common mechanism of this association is not fully understood. This study aims to investigate the molecular mechanism of this complication.
Methods:
Gene expression profiles of SLE (GSE50772) and AMI (GSE66360) were obtained from the Gene Expression Omnibus (GEO) database. Common differentially expressed genes (DEGs) in SLE and AMI were identified, and functional annotation, protein-protein interaction (PPI) network analysis, module construction, and hub gene identification were performed. Additionally, transcription factor (TF)-gene regulatory network and TF-miRNA regulatory network were constructed for the hub genes.
Results:
70 common DEGs (7 downregulated genes and 63 upregulated genes) were identified and were mostly enriched in signaling pathways such as the IL-17 signaling pathway, TNF signaling pathway, lipid metabolism, and atherosclerosis. Using cytoHubba, 12 significant hub genes were identified, including IL1B, TNF, FOS, CXCL8, JUN, PTGS2, FN1, EGR1, CXCL1, DUSP1, MMP9, and ZFP36.
Conclusions:
This study reveals a common pathogenesis of SLE and AMI and provides new perspectives for further mechanism research. The identified common pathways and hub genes may have important clinical implications for the prevention and treatment of AMI in SLE patients.
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