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Updated: Jul 14, 2025

Measuring Single-Cell Mitochondrial DNA Copy Number and Heteroplasmy Using Digital Droplet Polymerase Chain Reaction
Published on: July 12, 2022
Association Between Whole Blood-Derived Mitochondrial DNA Copy Number, Low-Density Lipoprotein Cholesterol, and
Xue Liu1, Xianbang Sun1, Yuankai Zhang1
1Department of Biostatistics, School of Public Health Boston University Boston MA USA.
Insights
Mitochondrial DNA copy number (mtDNA CN) associations with cardiovascular disease are not causal. High LDL cholesterol, not mtDNA CN, may drive vascular atherosclerosis risk.
Area of Science:
- Genetics
- Cardiovascular Medicine
- Metabolic Health
Background:
- The link between mitochondrial DNA copy number (mtDNA CN) and cardiovascular disease (CVD) is not well understood.
- Previous studies suggest associations, but causality remains unclear.
Purpose of the Study:
- To investigate the causal relationship between blood-derived mtDNA CN and CVD outcomes.
- To explore the role of mtDNA CN in cardiometabolic risk factors like obesity, diabetes, and hypertension.
Main Methods:
- Cross-sectional and prospective association analyses in 27,316 participants across 8 cohorts.
- Whole-genome sequencing for mtDNA CN assessment.
- Mendelian randomization analyses to infer causal effects.
Main Results:
- Confirmed associations between lower mtDNA CN and increased coronary heart disease (CHD) risk.
- Mendelian randomization showed no causal effect of mtDNA CN on CHD risk or vice versa.
- Identified a causal effect of high LDL cholesterol on lower mtDNA CN, but not the reverse.
- No causal links found between mtDNA CN and obesity, diabetes, or hypertension.
Conclusions:
- High LDL cholesterol, rather than mtDNA CN, may be the underlying factor in the relationship between mtDNA CN and vascular atherosclerosis.
- The observed associations between mtDNA CN and CVD outcomes may be confounded by lipid levels.
Abstract:
Background The relationship between mitochondrial DNA copy number (mtDNA CN) and cardiovascular disease remains elusive. Methods and Results We performed cross-sectional and prospective association analyses of blood-derived mtDNA CN and cardiovascular disease outcomes in 27 316 participants in 8 cohorts of multiple racial and ethnic groups with whole-genome sequencing. We also performed Mendelian randomization to explore causal relationships of mtDNA CN with coronary heart disease (CHD) and cardiometabolic risk factors (obesity, diabetes, hypertension, and hyperlipidemia). P<0.01 was used for significance. We validated most of the previously reported associations between mtDNA CN and cardiovascular disease outcomes. For example, 1-SD unit lower level of mtDNA CN was associated with 1.08 (95% CI, 1.04-1.12; P<0.001) times the hazard for developing incident CHD, adjusting for covariates. Mendelian randomization analyses showed no causal effect from a lower level of mtDNA CN to a higher CHD risk (β=0.091; P=0.11) or in the reverse direction (β=-0.012; P=0.076). Additional bidirectional Mendelian randomization analyses revealed that low-density lipoprotein cholesterol had a causal effect on mtDNA CN (β=-0.084; P<0.001), but the reverse direction was not significant (P=0.059). No causal associations were observed between mtDNA CN and obesity, diabetes, and hypertension, in either direction. Multivariable Mendelian randomization analyses showed no causal effect of CHD on mtDNA CN, controlling for low-density lipoprotein cholesterol level (P=0.52), whereas there was a strong direct causal effect of higher low-density lipoprotein cholesterol on lower mtDNA CN, adjusting for CHD status (β=-0.092; P<0.001). Conclusions Our findings indicate that high low-density lipoprotein cholesterol may underlie the complex relationships between mtDNA CN and vascular atherosclerosis.
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