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Updated: Jul 14, 2025

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Published on: August 30, 2016
Drug-microbiota interactions: an emerging priority for precision medicine.
Qing Zhao1,2,3,4, Yao Chen1,2,3,4, Weihua Huang1,2,3,4
1Department of Clinical Pharmacology, Xiangya Hospital, Central South University, 87 Xiangya Road, Changsha, 410008, PR China.
Individual variability in drug response is common, but genetics explain little. Gut microbiota significantly impacts drug efficacy and safety, opening new avenues for precision medicine.
Area of Science:
- Pharmacology
- Microbiology
- Genomics
Background:
- Individual variability in drug response (IVDR) leads to adverse drug reactions (ADRs) and treatment failures, imposing significant health and economic burdens.
- Pharmacogenomics, while informative, explains only a limited portion of IVDR, highlighting the need for alternative explanations.
- The gut microbiota, termed the 'second genome,' and its metabolites are increasingly recognized for their role in modulating therapeutic outcomes.
Purpose of the Study:
- To provide an up-to-date overview of pharmacomicrobiomics, exploring the interactions between gut microbiota and drugs used for systemic diseases.
- To summarize how gut microbiota influence drug absorption, distribution, metabolism, and excretion (ADME).
- To discuss the reciprocal effects of drugs on gut microbiota composition, function, and host immune responses.
Main Methods:
- Review of current literature on pharmacomicrobiomics and its impact on drug response.
- Analysis of studies investigating drug-microbiota interactions in various disease contexts (cancer, cardiovascular, endocrine).
- Discussion of multi-omics approaches and data integration strategies for translational research.
Main Results:
- Gut microbiota directly and indirectly affect drug ADME, influencing therapeutic efficacy and safety.
- Drugs can alter gut microbiota composition and function, leading to altered microbial metabolism and host immune responses.
- Interactions between drugs and gut microbiota are complex and disease-specific.
Conclusions:
- Pharmacomics offers a promising approach to address IVDR and enhance patient outcomes.
- Integrating multi-omics data (genomics, metagenomics) is crucial for understanding drug-microbiota interactions.
- Further research and clinical translation are imperative to realize the full potential of pharmacomicrobiomics in precision medicine.
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