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UvrD-like helicase Hmi1 Has an ATP independent role in yeast mitochondrial DNA maintenance
Sirelin Sillamaa1, Vlad-Julian Piljukov1, Iris Vaask1
1Institute of Molecular and Cell Biology, University of Tartu, Riia 23, 51010 Tartu, Estonia.
Abstract:
Hmi1 is a UvrD-like DNA helicase required for the maintenance of the yeast Saccharomyces cerevisiae mitochondrial DNA (mtDNA). Deletion of the HMI1 ORF leads to the formation of respiration-deficient petite mutants, which either contain a short fragment of mtDNA arranged in tandem repeats or lack mtDNA completely. Here we characterize point mutants of the helicase designed to target the ATPase or ssDNA binding activity and show that these mutations do not separately lead to complete loss of the Hmi1 function. The mutant strains support ATP production via oxidative phosphorylation and enable us to directly analyze the impact of both activities on the stability of wild-type mtDNA in this petite-positive yeast. Our data reveal that Hmi1 mutants affecting ssDNA binding display a stronger defect in the maintenance of mtDNA compared to the mutants of ATP binding/hydrolysis. Hmi1 mutants impaired in ssDNA binding demonstrate sensitivity to UV irradiation and lower levels of Cox2 encoded by the mitochondrial genome. This suggests a complex and multifarious role for Hmi1 in mtDNA maintenance-linked transactions, some of which do not require the ATP-dependent helicase activity.
Insights
Hmi1, a DNA helicase, is crucial for yeast mitochondrial DNA (mtDNA) stability. Impaired single-stranded DNA binding in Hmi1 mutants causes more severe mtDNA defects than impaired ATPase activity.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- Mitochondrial DNA (mtDNA) maintenance is essential for cellular respiration.
- Hmi1 is a UvrD-like DNA helicase implicated in yeast mtDNA stability.
- Loss of Hmi1 function leads to petite mutants with altered or absent mtDNA.
Purpose of the Study:
- To investigate the specific roles of Hmi1's ATPase and single-stranded DNA (ssDNA) binding activities in mtDNA maintenance.
- To analyze the impact of targeted Hmi1 mutations on wild-type mtDNA stability in petite-positive yeast.
- To elucidate the complex functions of Hmi1 in mtDNA maintenance.
Main Methods:
- Characterization of point mutants in Hmi1 targeting ATPase and ssDNA binding domains.
- Assessment of ATP production via oxidative phosphorylation in mutant strains.
- Analysis of mtDNA stability, UV sensitivity, and Cox2 gene expression in Hmi1 mutants.
Main Results:
- Mutations affecting Hmi1's ssDNA binding activity caused more significant mtDNA maintenance defects than mutations affecting ATPase activity.
- Hmi1 mutants with impaired ssDNA binding exhibited sensitivity to UV irradiation.
- These mutants also showed reduced levels of Cox2, a mitochondrially encoded protein.
Conclusions:
- Hmi1 plays a multifaceted role in mtDNA maintenance, with ssDNA binding being critical.
- Some Hmi1 functions in mtDNA maintenance may not rely on its ATP-dependent helicase activity.
- These findings deepen our understanding of the molecular mechanisms governing mitochondrial genome stability.
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